PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501662.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 352aa    MW: 38455.3 Da    PI: 4.2734
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-15195231135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_004501662.1 195 CQHCGVNEnnTPAMRRGPAGPRTLCNACGLMWANKGT 231
                     *******999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.3E-55691IPR010399Tify domain
PROSITE profilePS5132012.0185691IPR010399Tify domain
PfamPF062006.3E-96089IPR010399Tify domain
PfamPF062031.1E-15124165IPR010402CCT domain
PROSITE profilePS5101713.215124166IPR010402CCT domain
SuperFamilySSF577163.09E-11189239No hitNo description
SMARTSM004017.3E-9189242IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-14193236IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-15194238No hitNo description
PfamPF003201.8E-13195231IPR000679Zinc finger, GATA-type
PROSITE patternPS003440195222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAEQPLQFED PAIDVVDDED DDDDGGDDTM DELEETNVNS VNVAAASANQ DDVVLPTTRA  60
SELTLSFEGE VYVFPSVTHQ KVQAVLLLLE GRDGQAGMPT VELPFDQSNK GMGSITKRSN  120
LSRRIASLVR FREKRKERCF DKKIRYTVRK EVAERMHRKK GQFASLKQNP SSSNCDSPQS  180
VGQDGTPNPG SLRRCQHCGV NENNTPAMRR GPAGPRTLCN ACGLMWANKG TLRDLSKGGR  240
NLSVEQSGLD PRIDVKPTVL EGELSVIQNE QGFSKIPSEA IAAEGSNNHT LDPCDEELPE  300
SAEHLTNTLP LEIDQSSDND DEQEPLAELS NPSDTGMSNP SDTDVDIPGN FD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501662.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501662.10.0GATA transcription factor 24-like isoform X1
SwissprotQ8GXL72e-65GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S2Y9V50.0A0A1S2Y9V5_CICAR; GATA transcription factor 24-like isoform X1
STRINGXP_004501662.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-63ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]