PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501715.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 389aa    MW: 43321.1 Da    PI: 7.21
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.5e-41102178278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  XP_004501715.1 102 CLVDGCNSDLSKCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 178
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-3296163IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.54799176IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-38100181IPR004333Transcription factor, SBP-box
PfamPF031104.4E-30102175IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEWNLKSTSW DLGGIEEATL PNIETMDDDE SSRFEVYRMK GEFSVDLKLG QVVNSSNESP  60
LPLLSSKDAS VSKMGTPPPP TPSSGSSKRA RVVNSSAMTV SCLVDGCNSD LSKCRDYHRR  120
HKVCELHSKT PEVTIGGLKQ RFCQQCSRFH SLEQFDERKR SCRKRLDGHN RRRRKPQPEP  180
LTRPASSFLS NYQGTQLLPF SSSTAMVNSP WRSGLITSCH INNQHQQVHV VDHKQDLFLG  240
STTTNYGETK RLQFSQSDNN PTLDHNQNNT PLLRTSPLSE SDGLRTKMCC DNLTTTSSVH  300
ESPCALSLLS SSQTHTTHEN GLNQMVQSHS MSSMQPLGLS LHANNGFESM DRVLVPNGSE  360
SDHCSSLYNI GSDGSQGNEA PQLFPYQWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-281021751184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157174RKRSCRKRLDGHNRRRRK
2157175RKRSCRKRLDGHNRRRRKP
3158175KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501715.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9542524e-83CT954252.6 M.truncatula DNA sequence from clone MTH2-60M21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501715.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A1S2YB570.0A0A1S2YB57_CICAR; squamosa promoter-binding-like protein 13A
STRINGXP_004501714.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-61SBP family protein