PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004501768.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 213aa MW: 24604.6 Da PI: 9.1482

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.3e-18	89	132	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rWT++E++l++++ ++G+g+Wk+I+ +m +Rt+ q+ s+ qky XP_004501768.1 89 RWTEDEHKLFIEGLDKHGKGDWKSISMHMR-TRTPTQVASHAQKY 132 8***************************.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.798	82	137	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-11	84	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.19E-16	85	138	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-12	86	135	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.0E-15	88	135	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-16	89	132	IPR001005	SANT/Myb domain
CDD	cd00167	8.94E-14	89	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDEVGNYLSR EDEYALSIYP KDVVDRLKKM VADIHKTLQE IQSHYVVDVK KIDFDLVPAI 60 SQTPSLKKTA THHASESSNQ SYHETRGHRW TEDEHKLFIE GLDKHGKGDW KSISMHMRTR 120 TPTQVASHAQ KYFNHWKSIN ENKKRRRRPS IHDVTHLENR NTSAHQRPVI GQTSNPTPGH 180 MDYGFGSVPE TVIPEALMNL GPMSYPMHHS YTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	KKRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501768.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501768.1	1e-160	transcription factor SRM1-like
Refseq	XP_004517177.1	1e-160	transcription factor SRM1-like
Refseq	XP_027190013.1	1e-160	transcription factor SRM1-like
Swissprot	Q9FNN6	1e-36	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A1S2YA50	1e-158	A0A1S2YA50_CICAR; transcription factor SRM1-like
STRING	XP_004501768.1	1e-159	(Cicer arietinum)
STRING	XP_004501769.1	1e-159	(Cicer arietinum)
STRING	XP_004517177.1	1e-159	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	5e-39	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]