PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004501795.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 216aa MW: 24147.3 Da PI: 9.2431

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2.1e-14	92	137	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE +l+v++ ++lG+g W+ I++++ +++t+ q+ s+ qky XP_004501795.1 92 MAWTEEENKLFVRGLEKLGKGKWRDISKEFVTTKTPTQVASHAQKY 137 58*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.239	86	142	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.9E-16	89	140	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.94E-16	89	141	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-10	90	140	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-10	92	136	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-12	92	137	IPR001005	SANT/Myb domain
CDD	cd00167	1.10E-9	93	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRIARKCSYC GTLGHNSRTC NNSMSHKQLD FYSSSTSYLG TKRSFNMDSM LSSQTSLAIS 60 SSLPTLFGAN ENSDKYLGSC VISTIRDGKK GMAWTEEENK LFVRGLEKLG KGKWRDISKE 120 FVTTKTPTQV ASHAQKYFLR LYQNSFLLNR TNHPSSLLNV ECEARFKAFS EPSEAFLCYP 180 HSVLKWSSSS SSTNCTSQNE VLDLELRLGT PTPLAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501795.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501795.1	1e-160	probable transcription factor At5g61620 isoform X1
TrEMBL	A0A1S2YA63	1e-158	A0A1S2YA63_CICAR; probable transcription factor At5g61620 isoform X1
STRING	XP_004501795.1	1e-159	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15142	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	8e-29	MYB_related family protein