PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501802.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 241aa    MW: 27201.6 Da    PI: 9.4157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501802.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-111652051055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_004501802.2 165 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVNYVKLLQ 205
                     9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14154220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-12160215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-11161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.00E-9164201No hitNo description
PfamPF000102.1E-8165205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSQENNHSLA DTNYFFNCFD HVVANNSDIS ENFDHGDQVQ PIVFPTKQLK LKRLLGVSEL  60
EDKIHSCVNP KKKPRTSKDV QRCMKKAEYS KKSKKIDRNG NKAEETNASI DGHSSSGYTS  120
EEHNVYEENS GRVTSASKLT VALNSNGKIR ANRGSATDPQ SLYARKRRER INERLKTLQN  180
LVPNGTKVDI STMLEEAVNY VKLLQLQIKL LSSDELWMYA PIAYNGLDIG INLSQKIYPP  240
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975PKKKPRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501802.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4439591e-78GU443959.1 Trifolium repens clone BAC 11l07 cyclin d, calcium ATPase, E3 ubiquitin ligase, galactose oxidase, adeninephosphoribosyl transferase, kruppel-like zinc finger protein, and cysteine protease genes, complete cds; and unknown genes.
GenBankGU4439621e-78GU443962.1 Trifolium repens clone BAC 38j22 galactose oxidase, adeninephosphoribosyl transferase, kruppel-like zinc finger protein, transcription initiation factor, and proteinase inhibitor genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501802.31e-179transcription factor bHLH139
TrEMBLA0A1S2YA671e-177A0A1S2YA67_CICAR; transcription factor bHLH139
STRINGXP_004501802.11e-178(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-44ROOT HAIR DEFECTIVE 6-LIKE 2