PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004501886.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 198aa MW: 21119.7 Da PI: 7.2429

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.8	5.1e-45	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+k+l++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+ XP_004501886.1 10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_004501886.1 105 SANA 108 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.815	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MASSSSYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKILNELLP 60 QQREDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVQRLQ KELDSANADL LRFAYNDISP 120 SPLPPLPLVV PNSFHQQLIP QRGFTTARSF GNDGNAFYSF PYSIPWNDTS EDINGGVGGG 180 GGGSAGGVGG GVGGGGNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-65	9	124	10	127	LOB family transfactor Ramosa2.1
5ly0_B	1e-65	9	124	10	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501886.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC140849	1e-116	AC140849.8 Medicago truncatula clone mth2-17f20, complete sequence.
GenBank	AC147877	1e-116	AC147877.10 Medicago truncatula clone mth2-9b13, complete sequence.
GenBank	CU234113	1e-116	CU234113.3 M.truncatula DNA sequence from clone MTH2-16M17 on chromosome 3, complete sequence.
GenBank	JN412594	1e-116	JN412594.2 Medicago truncatula LOB domain protein mRNA, complete cds.
GenBank	JQ653161	1e-116	JQ653161.1 Medicago truncatula elongated petiolule 1 (ELP1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501886.1	1e-144	LOB domain-containing protein 25-like
Refseq	XP_027190323.1	1e-144	LOB domain-containing protein 25-like
Swissprot	Q9FML4	3e-71	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1S2YAC9	1e-143	A0A1S2YAC9_CICAR; LOB domain-containing protein 25-like
STRING	XP_004501886.1	1e-144	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	9e-74	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]