PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004502034.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 246aa MW: 28622.1 Da PI: 4.8374

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004502034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.3e-17	63	110	9	56
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV++WFqNrRa+ k XP_004502034.1 63 FDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARLK 110 58********************************************98 PP
2	HD-ZIP_I/II	122.8	1.6e-39	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl +qvk+LE+sFe ++kLeperKv+la+eLglqprqv +WFqnrRAR ktkqlE+dy +Lk+++d lk e ++L++e+e+L+++++e XP_004502034.1 56 EKKRRLGFDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARLKTKQLERDYGVLKSNFDVLKVEYSNLQQENEALTTKVRE 148 69**************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.665	52	112	IPR001356	Homeobox domain
SMART	SM00389	1.8E-15	55	116	IPR001356	Homeobox domain
CDD	cd00086	2.89E-15	57	113	No hit	No description
SuperFamily	SSF46689	6.42E-18	57	123	IPR009057	Homeodomain-like
Pfam	PF00046	7.6E-15	63	110	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-18	64	119	IPR009057	Homeodomain-like
PRINTS	PR00031	4.6E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.6E-6	92	108	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-15	112	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MKRFNNSNTM ASLLSIYPSK GVDERNETKG YSEEFQAMLD RLEQEDSYED ASLMLEKKRR 60 LGFDQVKALE KSFELDNKLE PERKVKLAEE LGLQPRQVSI WFQNRRARLK TKQLERDYGV 120 LKSNFDVLKV EYSNLQQENE ALTTKVRELK AKLLRDESNE TEKEESPISS GVVKEEISNV 180 DDSSLCFNGS YVPSTTSSMI NLVHYYDSRG SPEKIFQNHF MRMEEQNFFS VSELCNFFSV 240 DQSPTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	112	RRARLKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269\|PubMed:12678559}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004502034.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:12678559, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU024864	1e-126	CU024864.5 M.truncatula DNA sequence from clone MTH2-9F11 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502034.1	0.0	homeobox-leucine zipper protein ATHB-6-like
Swissprot	P46667	8e-51	ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBL	A0A1S2YCB4	1e-179	A0A1S2YCB4_CICAR; homeobox-leucine zipper protein ATHB-6-like
STRING	XP_004502034.1	1e-180	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1868	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	3e-53	homeobox protein 5

Publications ? help Back to Top
Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Stamm P, et al. The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination. Plant Physiol., 2017. 173(1): p. 907-917 [PMID:27872245]