PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502098.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 321aa    MW: 35979.9 Da    PI: 7.8119
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-09257311147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT+eE++ l+++v ++ +g     W++I +       ++Rt+ ++k++w++ 
   XP_004502098.1 257 RLFWTAEEEKTLKEGVLKFSTGnqniPWRKILEFGCrvfdNTRTPVDLKDKWRNM 311
                      678****************************9987799***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.2E-444101IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579034.56E-562101IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500907.062252312IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.6E-10253315IPR009057Homeodomain-like
SMARTSM007172.8E-5256314IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-11259314IPR009057Homeodomain-like
PfamPF002491.7E-6260311IPR001005SANT/Myb domain
CDDcd116602.40E-15260312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRKKSVCGGR RRSTTPSVSP LISPIPPLST SQDDNIATIY DSDTNTNTND DHTHAPLPDT  60
EPVESFDDNT CITCNQSGGP LLVCAQTDCP VTVHVTCIGS EPKFDYSAKK ALSSFLEKDQ  120
TLRKDKDHQP VQPVQDHANR DDPVVSHSGE GKQHNNNDHD LDRDRDRDRE NENDKGKISV  180
TSSSVSETND SDSNSIAVKK GYPNAKRKVV SVKKTLLWEQ KTGGASDVDD EEVTSSRTLK  240
LQKQNKNQNL LTGKRRRLFW TAEEEKTLKE GVLKFSTGNQ NIPWRKILEF GCRVFDNTRT  300
PVDLKDKWRN MTSKEGKITK L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253257KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502098.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120601e-39CU012060.10 M.truncatula DNA sequence from clone MTH2-62K13 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190053.10.0uncharacterized protein LOC101494287 isoform X2
TrEMBLA0A3Q7XR710.0A0A3Q7XR71_CICAR; uncharacterized protein LOC101494287 isoform X2
STRINGXP_004502096.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.21e-07MYB_related family protein