PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502131.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 154aa    MW: 17693.1 Da    PI: 7.7282
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.51.1e-3851051101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk +rr+C++dC+++pyfpa++p++f++vh+++G snv k+l++lp   re+a+++l+ eA++r++dPvyG+vg+i+kl qq++ +++ela
  XP_004502131.1   5 RCAACKSQRRRCPPDCIFSPYFPANDPQRFEYVHRIYGGSNVGKMLQQLPCYVREQAANTLYVEAQCRIQDPVYGCVGIISKLYQQIHDTEVELA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++++
  XP_004502131.1 100 KIQTQI 105
                     *99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8014105IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-385102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MIYGRCAACK SQRRRCPPDC IFSPYFPAND PQRFEYVHRI YGGSNVGKML QQLPCYVREQ  60
AANTLYVEAQ CRIQDPVYGC VGIISKLYQQ IHDTEVELAK IQTQIASHKI KNSQVESNFN  120
ILSTIDAESN LNFLPPQSNN MEFQLSSQIF NWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-34610512111LOB family transfactor Ramosa2.1
5ly0_B6e-34610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-41AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502131.11e-113LOB domain-containing protein 24-like
SwissprotP594683e-45LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1S2YCI01e-112A0A1S2YCI0_CICAR; LOB domain-containing protein 24-like
STRINGXP_004502131.11e-112(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-47LOB domain-containing protein 24