PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502402.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 309aa    MW: 35111 Da    PI: 4.9154
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1859112356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++  +q+++Le+ Fe ++++  e++e+LA +lgL+ rqV vWFqNrRa++k
  XP_004502402.1  59 KKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWK 112
                     45578899*********************************************9 PP
2HD-ZIP_I/II125.32.8e-4058150193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl  +qvk+LE++Fe e+kLeperK++la eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk + +++++++++L++e+ke
  XP_004502402.1  58 EKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAITQDNKALHNEIKE 150
                     69****************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1847116IPR009057Homeodomain-like
PROSITE profilePS5007117.05454114IPR001356Homeobox domain
SMARTSM003891.1E-1657118IPR001356Homeobox domain
CDDcd000861.87E-1559115No hitNo description
PfamPF000467.6E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-1966113IPR009057Homeodomain-like
PRINTSPR000311.9E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000311.9E-594110IPR000047Helix-turn-helix motif
PfamPF021832.4E-17114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKRLASSDSS PALITICPSI EEQSPRNKHV YGREFQSMML DGFEEEEVCV EEQEHHSEKK  60
RRLRVDQVKA LEKNFEVENK LEPERKEKLA IELGLQPRQV AVWFQNRRAR WKTKQLERDY  120
GVLKANYDAL KLKFDAITQD NKALHNEIKE LKSSLHEEEK STVSVAVKEE ITIPESGIDK  180
HNNPSSETSI PSSESKAHLN DVGVGEASSS LFPLELKDGS SDSDSSAISS SGVLQNEQHL  240
LLSPDSSPLK YNCFISSSSP SSSMNCFQYQ KSYHVKMEEQ NFLSADEACN FFSDEQAPTL  300
QWYCPDQWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502402.10.0homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S2YBI00.0A0A1S2YBI0_CICAR; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_004502402.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-58homeobox protein 6