PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502416.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 474aa    MW: 54218.6 Da    PI: 7.6434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07155176223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_004502416.1 155 FCEICGKGFKRDANLRMHMRAH 176
                     6*******************99 PP
2zf-C2H211.40.00099239262123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ k +s  s+Lk+H++ +
  XP_004502416.1 239 YSCNRCHkKNYSVLSDLKSHMKQC 262
                     99*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.15E-6151177No hitNo description
PROSITE profilePS5015711.863154181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5154176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015154176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SMARTSM0035557201234IPR015880Zinc finger, C2H2-like
SMARTSM00355220239260IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MYNPNPDSRY TTRRLHPQED PNSTPNPQVP LRNLSLVRTR IDSLRTFLSQ SINTNTPLTT  60
DHITLVSNQI VSAIHNTIVN AAALVSYSEN LTVPGPSVFP PLKLKPEPSA VDKTNHQKSD  120
SRIEPAEDDD DYLVDEDCEI VELDAVELLA EHIHFCEICG KGFKRDANLR MHMRAHGNKF  180
KTPEALAKPI DDGGRRRATR FSCPFQGCNR NKMHMKFRAL KSVVCVKNHF KRSHCPKMYS  240
CNRCHKKNYS VLSDLKSHMK QCGECRWKCS CGTTFSRKDK LFGHVALFEG HMPDFLFEDE  300
EKEKGKQVMV EESEEDPMAM TFTQVELGQN CKDSHQNSNL RLEYWCCAIA EALAMAGASG  360
VECSIDIEEW ERKDLEQYPP PHLLAQEEEE EKSSINRARR YTAQGKVYGL PTTTSHFLPN  420
KNSKKNDRES FTFTNHGEKL VRTMETRRPE ECTRSIKLIM TRVLAMLIMI LGHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502416.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502416.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
TrEMBLA0A1S2YBK80.0A0A1S2YBK8_CICAR; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
STRINGXP_004502416.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-70C2H2 family protein