PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502538.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 119aa    MW: 13532.3 Da    PI: 9.9683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502538.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-134381247
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++d+ +++G+g+Wk+I+r+m  +Rt+ q+ s+ qky
   XP_004502538.2  4 FIDGLNKYGKGDWKSISRHMR-TRTPTQVASHAQKY 38
                     9********************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.341143IPR017930Myb domain
CDDcd001674.26E-10339No hitNo description
SuperFamilySSF466894.41E-11444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-7440IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-10441IPR006447Myb domain, plants
PfamPF002492.4E-10438IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MVEFIDGLNK YGKGDWKSIS RHMRTRTPTQ VASHAQKYFN HLKSINENKK RRRRPSIHDV  60
THLENGNTSA HQLPVIGQTS NPTPGDMDYG FGSVHETVIP EALMNLGPMS YPMQHSYTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502538.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502538.24e-86transcription factor SRM1-like
SwissprotQ9FNN63e-22SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S2YBV41e-84A0A1S2YBV4_CICAR; transcription factor SRM1-like
STRINGXP_004502538.12e-85(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.15e-25Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]