PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502571.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 543aa    MW: 61103.7 Da    PI: 4.7724
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.35e-1371725432374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL+ecA+a+s+g++e+a+++++ l++++s +g+p qR+aay++e+Laarla+s++++y+al+++e +   ss++laa+++++ev+P++kf+++
  XP_004502571.1 172 KQLLYECANAISEGNKEEATSMINSLRKMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALRCKEPP---SSDRLAAMQILFEVCPCFKFGFI 263
                     589*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN+aI eav+ +++vHiiDfdi+qG Q+++L+q+LasRp +p ++R+Tg+++pes+  s   l+ +g+rL+k+Ae+lg++fef++ va+r++ +
  XP_004502571.1 264 AANNAITEAVKDDRKVHIIDFDINQGSQYINLIQTLASRPCKPSHVRLTGIDDPESVqrSIGGLNIIGQRLEKLAESLGLSFEFRA-VASRTSIV 357
                     *******************************************************9988899************************.7******* PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++++L+++   +Eal+Vn+++qlh+++desvs+ +erd++L+lvks++Pk+v+v+eq++++n+++Fl+rf+ea +yysa+f+sl+++lpres++r
  XP_004502571.1 358 TPSMLKLNCcpDEALVVNFAFQLHHMPDESVSTINERDQLLRLVKSMNPKIVTVIEQDVNTNTTPFLQRFVEAYNYYSAVFESLDVTLPRESQDR 452
                     ****9877666************************************************************************************ PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++vEr++l+r+ivn vaceg++r+er e ++kWr+r+++aGF++ p+s+++ ++++ l++++ ++ y+++ee+g+l +gW+d++L+++SaWr
  XP_004502571.1 453 MNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARITMAGFNSSPMSSNVSDEIRKLIKMYCDR-YNIKEEKGALHFGWEDKNLIVASAWR 543
                     ***************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.822145524IPR005202Transcription factor GRAS
PfamPF035141.7E-134172543IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MYRTDAYSSQ SYKKYFHDLQ TEELIEPSSS EISTTSIDQD GASSSYQLIA SSGASLLTNK  60
PFDTFLMSTR NHSADKSNFG SDSMENRSVD SIEIDSEMRS KLQALEKALL DDSEADEEEE  120
YVTSQSMEID SIQNMLINDH DSPKEYSSSD SNISTISITN TKEITRISRT PKQLLYECAN  180
AISEGNKEEA TSMINSLRKM VSIQGEPSQR IAAYMVEGLA ARLAESGKSI YRALRCKEPP  240
SSDRLAAMQI LFEVCPCFKF GFIAANNAIT EAVKDDRKVH IIDFDINQGS QYINLIQTLA  300
SRPCKPSHVR LTGIDDPESV QRSIGGLNII GQRLEKLAES LGLSFEFRAV ASRTSIVTPS  360
MLKLNCCPDE ALVVNFAFQL HHMPDESVST INERDQLLRL VKSMNPKIVT VIEQDVNTNT  420
TPFLQRFVEA YNYYSAVFES LDVTLPRESQ DRMNVERQCL ARDIVNTVAC EGEDRIERYE  480
VAGKWRARIT MAGFNSSPMS SNVSDEIRKL IKMYCDRYNI KEEKGALHFG WEDKNLIVAS  540
AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6817754224377Protein SCARECROW
5b3h_D1e-6817754224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502571.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502571.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1S2YBZ20.0A0A1S2YBZ2_CICAR; scarecrow-like protein 1
STRINGXP_004502571.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]