PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502719.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 238aa    MW: 28203.2 Da    PI: 5.7827
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-194497356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++f++eq++ Le  Fe+++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  XP_004502719.1 44 NKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 97
                    5679*************************************************9 PP
2HD-ZIP_I/II123.69.4e-4044135293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krr+s+eq+++LE  Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ ++L++e+e+L++el++
  XP_004502719.1  44 NKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQSLKEEKESLQSELQK 135
                     79***************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-191798IPR009057Homeodomain-like
SuperFamilySSF466893.38E-182799IPR009057Homeodomain-like
PROSITE profilePS5007117.413999IPR001356Homeobox domain
SMARTSM003893.4E-1641103IPR001356Homeobox domain
PfamPF000464.0E-174497IPR001356Homeobox domain
CDDcd000866.71E-1446100No hitNo description
PRINTSPR000318.3E-67079IPR000047Helix-turn-helix motif
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PRINTSPR000318.3E-67995IPR000047Helix-turn-helix motif
Gene3DG3DSA:1.10.287.5104.4E-499154No hitNo description
PfamPF021832.2E-1199139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MMEDEENIHI HEAYYNKGKN VESMSCLETP NQNSRKKNKK IENNKRRFSD EQIRSLECIF  60
ESESKLEPRK KMQLARDLGL QPRQVAIWFQ NRRARWKSKR IEQEYRKLKD EYDNLASKFQ  120
SLKEEKESLQ SELQKLSYMM ETCHDGGREV KENSTEDGGS GNGYSNCRGE VKKSFSNDQN  180
ERSTIRIDQK DEDKGHQVMR NDDNDHEEIP LTTLEKWYSV DPSGILDCNS SQWLDFWT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502719.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3022481e-134CU302248.6 M.truncatula DNA sequence from clone MTH2-33P23 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502719.11e-177homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-43ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A1S2YCB61e-176A0A1S2YCB6_CICAR; homeobox-leucine zipper protein ATHB-12-like
STRINGXP_004502719.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-34homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]