PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004502856.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 240aa MW: 26654.3 Da PI: 9.0244

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004502856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131	5e-41	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++ e +r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+ XP_004502856.1 42 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVAECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELN 136 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e XP_004502856.1 137 VVRGE 141 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.473	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-41	42	139	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSRERERFEE IGKKIKREGD VSSQMGRRHM LGPPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPHK FASVHKVFGA SNVSKMLMEV AECQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISALQQQVQS LQAELNVVRG EILKYKLREA NMNNMNMISL PSSHHHHHHH HVSMLLPNSS 180 GGAVSNIATT PLPPPPPPPP PLPLSTITSS SSSLYIQQQS DPNNYSRISS EHHNNISYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	34	149	3	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	34	149	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004502856.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	5e-32	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	5e-32	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502856.1	1e-178	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-82	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1S2YCK1	1e-177	A0A1S2YCK1_CICAR; LOB domain-containing protein 15-like
STRING	XP_004502856.1	1e-178	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-84	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]