PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502877.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 234aa    MW: 26938.4 Da    PI: 8.4849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32157215159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  XP_004502877.1 157 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 215
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33142215IPR003657WRKY domain
SuperFamilySSF1182901.05E-28149216IPR003657WRKY domain
PROSITE profilePS5081129.356152217IPR003657WRKY domain
SMARTSM007749.8E-37157216IPR003657WRKY domain
PfamPF031063.6E-25158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSRTNIVNES LFDEEEDHHE IPMQMGFNIP FPPNMTLPPL GCHDQSLKGN ISAMSSSLSP  60
QPPNFSQTLL ATVLHKPRQF EDLTSTFGGG SHLLSLNRSG VNSWAWGEVS DCLMGKRRDD  120
NDNELGVSAI KMKKMKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRSY  180
YRCTQDNCRV KKRVERLAED PRMVITTYEG RHVHSPSNEL EDSQNQSQLA NFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26148214874Probable WRKY transcription factor 4
2lex_A1e-26148214874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1490961e-124BT149096.1 Medicago truncatula clone JCVI-FLMt-12F22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502877.11e-178probable WRKY transcription factor 13
TrEMBLA0A1S2YCN51e-177A0A1S2YCN5_CICAR; probable WRKY transcription factor 13
STRINGXP_004502877.11e-178(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-55WRKY DNA-binding protein 13