PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502933.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 334aa    MW: 37223.5 Da    PI: 4.7703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.95.6e-38211417129
             NAM  17 eyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109
                     ++Lk+kv g+k++  +vi+e+diyk+ PwdLp k  +k+++ +wyfFs++ kky+tg r nrat+ gyWk+tgkd+++ + k+++vg+ +tLvf+
  XP_004502933.1   2 YFLKRKVMGRKFPY-DVIAELDIYKYAPWDLPdKsLLKSGDLKWYFFSPTGKKYSTGGRMNRATEIGYWKTTGKDRSIEH-KNQVVGMIRTLVFH 94 
                     89************.99**************96446677888*************************************9.999*********** PP

             NAM 110 kgrapkgektdWvmheyrle 129
                     +g+++kg +tdWvmhe+rle
  XP_004502933.1  95 TGKSHKGDRTDWVMHEFRLE 114
                     *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.2091136IPR003441NAC domain
SuperFamilySSF1019413.53E-461136IPR003441NAC domain
PfamPF023653.0E-152113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MYFLKRKVMG RKFPYDVIAE LDIYKYAPWD LPDKSLLKSG DLKWYFFSPT GKKYSTGGRM  60
NRATEIGYWK TTGKDRSIEH KNQVVGMIRT LVFHTGKSHK GDRTDWVMHE FRLEDKYLTD  120
KGIPQNSYVI CRVFQKEGPG PRNGAQYGKP FNEKDWDSEE EVDCPQPVPV AAVSAPAPIL  180
PSSCHISVAN DMHPTTSGCI GLASSSYLSR VMPSGVTHPS APSNQVDDDI LSMLASFKDD  240
NDTSAKNENN GSEKVDNSGQ ANNAEGAPYL DPNEIFESLG DLDSLIGLDE GDGFSYGQKD  300
EYTKNEMPST SNVSLFCDPQ HDFLELTDLE APLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-35313734166NO APICAL MERISTEM PROTEIN
1ut4_B2e-35313734166NO APICAL MERISTEM PROTEIN
1ut7_A2e-35313734166NO APICAL MERISTEM PROTEIN
1ut7_B2e-35313734166NO APICAL MERISTEM PROTEIN
4dul_A2e-35313734166NAC domain-containing protein 19
4dul_B2e-35313734166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502933.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120501e-106CU012050.16 M.truncatula DNA sequence from clone MTH2-31E18 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502931.10.0NAC domain-containing protein 82 isoform X1
RefseqXP_004502932.10.0NAC domain-containing protein 82 isoform X2
RefseqXP_004502933.10.0NAC domain-containing protein 82 isoform X2
TrEMBLA0A1S2YCQ90.0A0A1S2YCQ9_CICAR; NAC domain-containing protein 82 isoform X2
TrEMBLA0A1S2YE670.0A0A1S2YE67_CICAR; NAC domain-containing protein 82 isoform X1
STRINGXP_004502931.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.44e-76NAC domain containing protein 82