PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004503068.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YB

Protein Properties

Length: 184aa MW: 21015.5 Da PI: 4.7891

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004503068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.3	1.4e-55	27	122	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkk++P+n+kiskdake vqecvsefisfvt easdkcq+ekrkt+ngdd++wa++tlGf+dyv+plk yl+ky+e+ege XP_004503068.1 27 KEQDRFLPIANVGRIMKKAVPSNGKISKDAKEAVQECVSEFISFVTVEASDKCQKEKRKTVNGDDIIWAITTLGFDDYVDPLKFYLQKYKEIEGE 121 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_004503068.1 122 K 122 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-52	25	144	IPR009072	Histone-fold
SuperFamily	SSF47113	9.43E-41	29	146	IPR009072	Histone-fold
Pfam	PF00808	1.4E-27	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-18	60	78	No hit	No description
PRINTS	PR00615	1.2E-18	79	97	No hit	No description
PRINTS	PR00615	1.2E-18	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEDEGHSNPA NGVITSLESP YSKTCNKEQD RFLPIANVGR IMKKAVPSNG KISKDAKEAV 60 QECVSEFISF VTVEASDKCQ KEKRKTVNGD DIIWAITTLG FDDYVDPLKF YLQKYKEIEG 120 EKLNVPKQQR SEQRLQQQYH TQDQNNVPLY VGDDQLFSLP FSPNSIQKQL QPQDQIDSVG 180 QWQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	9e-46	27	117	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	9e-46	27	117	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004503068.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004503068.1	1e-135	nuclear transcription factor Y subunit B-7-like
Swissprot	Q9SIT9	3e-62	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A1S2YD36	1e-133	A0A1S2YD36_CICAR; nuclear transcription factor Y subunit B-7-like
STRING	XP_004503068.1	1e-134	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	5e-63	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]