PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503164.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 232aa    MW: 26550.2 Da    PI: 9.7837
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-056082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_004503164.1 60 YSCHFCKREFRSAQALGGHMNVH 82
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.0116087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEESQDLMWM MKRKQNFKSP IEAVPYGIGA INSNNSWEEK AFAEDAARIL GGCIWPPRSY  60
SCHFCKREFR SAQALGGHMN VHRRDRARLK HHHNEEDLHS HHKNHFTTTS RVSSSWPSTI  120
CTQENCFQPN MSTYSTSIRK GNHMDFLKGV ANERKQIFKG LNKNNFVETS LSMGQKLAYG  180
DKAITYKRTK TSSLPCLNER CLSVKSAEFV IGIKPGIEDL DLELRLGKTQ KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125582229superman protein
2l1o_A1e-125582229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503164.11e-177probable transcriptional regulator RABBIT EARS
TrEMBLA0A1S2YDD31e-176A0A1S2YDD3_CICAR; probable transcriptional regulator RABBIT EARS
STRINGXP_004503164.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-26zinc-finger protein 10