PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503253.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-X1
Protein Properties Length: 1061aa    MW: 115472 Da    PI: 8.024
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.41.1e-06253270118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H+C + CH+GpC+pC
  XP_004503253.1 253 CGRHRCDQFCHLGPCDPC 270
                     ****************** PP
2zf-NF-X118.93.4e-06317334118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C ++CH+G C +C
  XP_004503253.1 317 CGNHICTETCHLGSCAEC 334
                     ****************** PP
3zf-NF-X121.26.4e-07375392118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H+C+++CH G+C pC
  XP_004503253.1 375 CGMHRCKQKCHVGDCSPC 392
                     ****************** PP
4zf-NF-X117.87.2e-06471490120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C +lCH G CppC q
  XP_004503253.1 471 CGQHACDSLCHSGHCPPCLQ 490
                     ******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500169.18790147IPR019787Zinc finger, PHD-finger
SuperFamilySSF578505.65E-592148No hitNo description
PROSITE profilePS500899.30393145IPR001841Zinc finger, RING-type
PROSITE patternPS01359093144IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.97E-6180237No hitNo description
SMARTSM004380.023199217IPR000967Zinc finger, NF-X1-type
PfamPF014227.9201216IPR000967Zinc finger, NF-X1-type
CDDcd060088.15E-11243291No hitNo description
PfamPF014221.3E-4253270IPR000967Zinc finger, NF-X1-type
SMARTSM004380.045253272IPR000967Zinc finger, NF-X1-type
CDDcd060081.69E-7307352No hitNo description
PfamPF014220.0029317334IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0032317336IPR000967Zinc finger, NF-X1-type
CDDcd060085.28E-12365413No hitNo description
PfamPF014226.7E-6375392IPR000967Zinc finger, NF-X1-type
SMARTSM004383.4E-4375394IPR000967Zinc finger, NF-X1-type
PfamPF0142217433444IPR000967Zinc finger, NF-X1-type
SMARTSM0043889433463IPR000967Zinc finger, NF-X1-type
CDDcd060088.82E-8461513No hitNo description
PfamPF014222.4E-4471488IPR000967Zinc finger, NF-X1-type
SMARTSM004383.7E-4471490IPR000967Zinc finger, NF-X1-type
SMARTSM004381.1528546IPR000967Zinc finger, NF-X1-type
PfamPF0142237535545IPR000967Zinc finger, NF-X1-type
PfamPF014220.27580595IPR000967Zinc finger, NF-X1-type
SMARTSM004382.1580609IPR000967Zinc finger, NF-X1-type
PfamPF014223.5611637IPR000967Zinc finger, NF-X1-type
SMARTSM004380.078618639IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3303.2E-6850905IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1061 aa     Download sequence    Send to blast
MAMGILLLTD LGIKIIVSVM SLQRRDRVCR QEWVRRPSSS SSSSSTINEN QNGGSNRIRN  60
VRQDQEEKGL LNLHLPQLLQ EIQDKLNKGT VECMICYETV GRSAPIWSCS SCYSIFHLNC  120
TNNWARAPTS SASPHNNHWR CPGCQSLQLN SNNHIIISYF CFCRKRLDPP SDFYLTPHSC  180
GEPCGKPLQN GNSKSGDLCP HVCVLQCHPG PCPPCKAFAP PRLCPCGKKN ITTRCSDGES  240
LTCGQQCQKL LQCGRHRCDQ FCHLGPCDPC HLPTDASCFC SKKSEAILCG DIALKGEIKV  300
EGGVFSCGST CGNKLGCGNH ICTETCHLGS CAECDLLPTR VKTCCCGKVS LEGERHSCLD  360
PIPTCSQVCG KSLPCGMHRC KQKCHVGDCS PCLVLVPQKC LCGSTSRTVE CCKTTTENEK  420
FTCEKPCGQK KNCGRHRCSE RCCPLSNSKN ILNADWDPHL CSISCGKKLR CGQHACDSLC  480
HSGHCPPCLQ TIFTDLTCAC GRTSIPPPLP CGTPMPSCQL PCSVPQSCSH PASHSCHYGD  540
CPPCSAPVAK ECIGGHVVLR NICGSKDIRC DNLCGKTRHC GLHACGRTCH SPPCDNHTVV  600
QGIRTSCRQT CGAPRRDCRH TCTAPCHPSS PCPDRRCEFP VTITCTCGRI TTNVPCDAGG  660
GSANYNVDDI LEASIIQKLQ PLDANGKEVS LGQRKLMCND ECAKLERKRV LTNAFEITTP  720
NLDSFNLGEN SVASSALLGD ILRRDSKWVL SVEERCKCLV LGKSKGTTHG LKAHVFCPML  780
KDKRDAVRMI AERWKLAINT AGREPKQFIV VHVSRKSRAP SRVLGIKGTT TVHVPLPPAF  840
DHLIDMDPRF VVSFPDLPRV ADISALVLRF GGECELVWLD DKNALAVFND PARAATAMRR  900
LDHGSVYQGA IKVVQNVGAS VASSVTNAWG GARTTKGGAL VALKGHVWKK AVVVESGWRE  960
DSWGDEEWAT GSANIIQSSI WKKEAPISAS SNPWSVLDQE WPSSSSAAAV KDDTSRKQTE  1020
SNVVTKLDPR DGGSNLEHQH GRDFDTSKVF DVVDDWEKAC E
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503253.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503254.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027191628.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1S2YEV20.0A0A1S2YEV2_CICAR; NF-X1-type zinc finger protein NFXL1-like
STRINGXP_004503253.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1