PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503254.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-X1
Protein Properties Length: 1042aa    MW: 113490 Da    PI: 8.024
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.41.1e-06234251118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H+C + CH+GpC+pC
  XP_004503254.1 234 CGRHRCDQFCHLGPCDPC 251
                     ****************** PP
2zf-NF-X118.93.3e-06298315118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C ++CH+G C +C
  XP_004503254.1 298 CGNHICTETCHLGSCAEC 315
                     ****************** PP
3zf-NF-X121.26.2e-07356373118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H+C+++CH G+C pC
  XP_004503254.1 356 CGMHRCKQKCHVGDCSPC 373
                     ****************** PP
4zf-NF-X117.87.1e-06452471120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C +lCH G CppC q
  XP_004503254.1 452 CGQHACDSLCHSGHCPPCLQ 471
                     ******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500169.18771128IPR019787Zinc finger, PHD-finger
SuperFamilySSF578507.06E-573129No hitNo description
PROSITE profilePS500899.30374126IPR001841Zinc finger, RING-type
PROSITE patternPS01359074125IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.68E-6161218No hitNo description
SMARTSM004380.023180198IPR000967Zinc finger, NF-X1-type
PfamPF014227.7182197IPR000967Zinc finger, NF-X1-type
CDDcd060081.13E-10224272No hitNo description
PfamPF014221.3E-4234251IPR000967Zinc finger, NF-X1-type
SMARTSM004380.045234253IPR000967Zinc finger, NF-X1-type
CDDcd060082.28E-7288333No hitNo description
PfamPF014220.0028298315IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0032298317IPR000967Zinc finger, NF-X1-type
CDDcd060087.64E-12346394No hitNo description
PfamPF014226.6E-6356373IPR000967Zinc finger, NF-X1-type
SMARTSM004383.4E-4356375IPR000967Zinc finger, NF-X1-type
PfamPF0142217414425IPR000967Zinc finger, NF-X1-type
SMARTSM0043889414444IPR000967Zinc finger, NF-X1-type
CDDcd060081.23E-7442494No hitNo description
PfamPF014222.4E-4452469IPR000967Zinc finger, NF-X1-type
SMARTSM004383.7E-4452471IPR000967Zinc finger, NF-X1-type
SMARTSM004381.1509527IPR000967Zinc finger, NF-X1-type
PfamPF0142236516526IPR000967Zinc finger, NF-X1-type
PfamPF014220.27561576IPR000967Zinc finger, NF-X1-type
SMARTSM004382.1561590IPR000967Zinc finger, NF-X1-type
PfamPF014223.5592618IPR000967Zinc finger, NF-X1-type
SMARTSM004380.078599620IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3303.1E-6831886IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MSLQRRDRVC RQEWVRRPSS SSSSSSTINE NQNGGSNRIR NVRQDQEEKG LLNLHLPQLL  60
QEIQDKLNKG TVECMICYET VGRSAPIWSC SSCYSIFHLN CTNNWARAPT SSASPHNNHW  120
RCPGCQSLQL NSNNHIIISY FCFCRKRLDP PSDFYLTPHS CGEPCGKPLQ NGNSKSGDLC  180
PHVCVLQCHP GPCPPCKAFA PPRLCPCGKK NITTRCSDGE SLTCGQQCQK LLQCGRHRCD  240
QFCHLGPCDP CHLPTDASCF CSKKSEAILC GDIALKGEIK VEGGVFSCGS TCGNKLGCGN  300
HICTETCHLG SCAECDLLPT RVKTCCCGKV SLEGERHSCL DPIPTCSQVC GKSLPCGMHR  360
CKQKCHVGDC SPCLVLVPQK CLCGSTSRTV ECCKTTTENE KFTCEKPCGQ KKNCGRHRCS  420
ERCCPLSNSK NILNADWDPH LCSISCGKKL RCGQHACDSL CHSGHCPPCL QTIFTDLTCA  480
CGRTSIPPPL PCGTPMPSCQ LPCSVPQSCS HPASHSCHYG DCPPCSAPVA KECIGGHVVL  540
RNICGSKDIR CDNLCGKTRH CGLHACGRTC HSPPCDNHTV VQGIRTSCRQ TCGAPRRDCR  600
HTCTAPCHPS SPCPDRRCEF PVTITCTCGR ITTNVPCDAG GGSANYNVDD ILEASIIQKL  660
QPLDANGKEV SLGQRKLMCN DECAKLERKR VLTNAFEITT PNLDSFNLGE NSVASSALLG  720
DILRRDSKWV LSVEERCKCL VLGKSKGTTH GLKAHVFCPM LKDKRDAVRM IAERWKLAIN  780
TAGREPKQFI VVHVSRKSRA PSRVLGIKGT TTVHVPLPPA FDHLIDMDPR FVVSFPDLPR  840
VADISALVLR FGGECELVWL DDKNALAVFN DPARAATAMR RLDHGSVYQG AIKVVQNVGA  900
SVASSVTNAW GGARTTKGGA LVALKGHVWK KAVVVESGWR EDSWGDEEWA TGSANIIQSS  960
IWKKEAPISA SSNPWSVLDQ EWPSSSSAAA VKDDTSRKQT ESNVVTKLDP RDGGSNLEHQ  1020
HGRDFDTSKV FDVVDDWEKA CE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503254.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503254.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027191628.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1S2YEV20.0A0A1S2YEV2_CICAR; NF-X1-type zinc finger protein NFXL1-like
STRINGXP_004503253.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1