PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503282.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 368aa    MW: 41769.4 Da    PI: 7.9895
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.9e-2290149357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  XP_004503282.1  90 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 149
                     7*****************99**************************************97 PP
2Wus_type_Homeobox114.64.7e-3789151365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
     XP_004503282.1  89 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 151
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-587154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-990149IPR009057Homeodomain-like
SuperFamilySSF466892.02E-1290155IPR009057Homeodomain-like
PfamPF000467.3E-2090149IPR001356Homeobox domain
CDDcd000861.22E-691151No hitNo description
PROSITE profilePS5007111.45195150IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MWMVGYNEGS DFNVAADYPF NGRKLRPIIP RPVTSTTPPN NTSTTPCLNR NIHANDFFSQ  60
YHNLQAAAAA SVGDQSKRTE LNNSAVVVSS RWNPTPEQLR ALEELYRRGT RTPSAEQIQQ  120
ITAQLRRFGK IEGKNVFYWF QNHKARERQK RRRQMESSAA DQFDATTSLV EKKDLGSSRT  180
VFEVEQTKNN WLPSTNSTTS TLAEESVSIQ RAVAAGKADQ CRTDGWVQFD ELELQQRRNF  240
MERNATWHMM QFTCPHPTTL LIPNNSSNYT SSITTTTPTA TLTTTLMDPK HDLSLFISPH  300
THSQRQNGFH NNITHNDDHC VESQTLQLFP IRNGDGCSDI INHHKETEIS ASAMNAPSHF  360
IEFLPLKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503282.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503282.10.0WUSCHEL-related homeobox 1 isoform X3
TrEMBLA0A1S2YDM50.0A0A1S2YDM5_CICAR; WUSCHEL-related homeobox 1 isoform X3
STRINGXP_004503280.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.17e-60WUSCHEL related homeobox 1