PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503919.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YB
Protein Properties Length: 223aa    MW: 25873.6 Da    PI: 6.6993
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.84.8e-5644139297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdrflPianv+rimkkv+P n+kisk+aketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk yl+kyr++ege
  XP_004503919.1  44 KEQDRFLPIANVGRIMKKVIPPNGKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVDPLKCYLQKYRDIEGE 138
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     k
  XP_004503919.1 139 K 139
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-5239170IPR009072Histone-fold
SuperFamilySSF471137.92E-4046151IPR009072Histone-fold
PfamPF008083.9E-2749113IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.0E-197795No hitNo description
PROSITE patternPS0068508096IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.0E-1996114No hitNo description
PRINTSPR006151.0E-19115133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDDESHNSSL PNGFNKGSPE SPCLKTINNN NNNHHDHHNH NSNKEQDRFL PIANVGRIMK  60
KVIPPNGKIS KEAKETVQEC VSEFISFVTG EASDKCQREK RKTINGDDVI WAITTLGFED  120
YVDPLKCYLQ KYRDIEGEKV NVPKQQRCEQ RLLNQHQHQH HHYLNQDENN QHFNNSVYTS  180
TNLMSQPPYV TTDQPFPLPF SPNSIQKQLR PQDQIDSLGH WYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4444134292Transcription factor HapC (Eurofung)
4g92_B2e-4444134292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503919.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503919.11e-167nuclear transcription factor Y subunit B-7-like
SwissprotQ9SIT94e-71NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A1S2YF701e-166A0A1S2YF70_CICAR; nuclear transcription factor Y subunit B-7-like
STRINGXP_004503919.11e-167(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.15e-71nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]