PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503962.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 493aa    MW: 56743.6 Da    PI: 4.6067
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS263.85.7e-811234831374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.d..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lLl+ Aeav++++++la+ ++++l++ +s +  d   ++Rla +ft++L  + ++       a +   ++ +++++++ ++++++e+sP++k
  XP_004503962.1 123 LVDLLLTGAEAVEAQNFNLASDIIEKLNNASSLENgDnsLLKRLAIFFTKGLYYKTTN-------APEFHWDHVSTQTKSFCVFQILQELSPYVK 210
                     6899**************************887653433579***********99998.......555566666667888999999********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaI ea+eg + vH+iDfdi++G+QWp+L+  La R++ + slR+T++   +++s+ ++++tg+rL++fA++++ pf f+ +++   e
  XP_004503962.1 211 FAHFTANQAIFEATEGVNDVHVIDFDIMEGIQWPSLMVDLAMRKN-TTSLRVTAITG-DQQSAASVQQTGRRLKEFADSINFPFVFDQMMMAGEE 303
                     *******************************************65.59*******99.6689**************************8777777 PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklpr 277
                     d++  eL    g +++Vn+++  + ++++s sl +   ++++ v +lsP++vv+ve+e    + + s sF+e f+eal++y al dsl ++ l +
  XP_004503962.1 304 DFRGIEL----GHTVIVNCMI-HQWMPNRSFSLVK---TFVDGVIKLSPRLVVLVEEElfnfSRLKSMSFVEFFCEALHHYIALSDSLvSTLLRS 390
                     7766666....99*******9.5667888899988...********************8775556999********************5555555 PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                     ++ e + +E+e+lg +i + v +   er+er      W+er+ +  G+k v +s+ + +qak l++ ++ +gy v+ e+  l l+Wk+rpL+svS
  XP_004503962.1 391 HKMELNLIEKEVLGVRILDSVRQFPCEREERIL----WEERFYSlKGYKRVGMSTCNISQAKFLISLFG-KGYWVQFENSKLALCWKSRPLTSVS 480
                     5588899********************999988....*****8758***********************.9************************ PP

            GRAS 372 aWr 374
                      W+
  XP_004503962.1 481 IWE 483
                     **5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.28397464IPR005202Transcription factor GRAS
PfamPF035142.0E-78123483IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MNVMDYEQFD YSFTPPYLNQ LHECTLENSS PSQTEHLLSP NTILDEILFD NTILDEIFDQ  60
NSIEGLLQQH KNHEFDIVNH EETIMAPGNE LYHEKGCENM VVSMETDSCW KEVQEELMEE  120
TSLVDLLLTG AEAVEAQNFN LASDIIEKLN NASSLENGDN SLLKRLAIFF TKGLYYKTTN  180
APEFHWDHVS TQTKSFCVFQ ILQELSPYVK FAHFTANQAI FEATEGVNDV HVIDFDIMEG  240
IQWPSLMVDL AMRKNTTSLR VTAITGDQQS AASVQQTGRR LKEFADSINF PFVFDQMMMA  300
GEEDFRGIEL GHTVIVNCMI HQWMPNRSFS LVKTFVDGVI KLSPRLVVLV EEELFNFSRL  360
KSMSFVEFFC EALHHYIALS DSLVSTLLRS HKMELNLIEK EVLGVRILDS VRQFPCEREE  420
RILWEERFYS LKGYKRVGMS TCNISQAKFL ISLFGKGYWV QFENSKLALC WKSRPLTSVS  480
IWEPTAYMSD KGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3713148427380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503962.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S2YFA80.0A0A1S2YFA8_CICAR; nodulation-signaling pathway 2 protein-like
STRINGXP_004503962.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.18e-53GRAS family protein