PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004504001.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 227aa MW: 26031.4 Da PI: 9.7076

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004504001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.8	4.1e-32	151	209	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt ++C vkk+ver aedp++v++tYeg+H h+ XP_004504001.1 151 LDDGYKWRKYGQKVVKNTQHPRSYYRCTEENCGVKKRVERLAEDPRMVITTYEGRHVHT 209 59*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.0E-32	135	209	IPR003657	WRKY domain
PROSITE profile	PS50811	28.885	146	211	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-28	146	209	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	151	210	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	152	208	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSQIVNNNLF EEQNHEIPTQ MGFIPFQTNL TFPSLKAFNS IASSLTSDSD STISNLTQTL 60 LTTNPQKSRQ YLSPNFGETQ FLSLHRSSVN PWAILGGGTS DCFKSGKRSG LILDDHHLGI 120 SPMKMKKMKG RKKVREPRFC FKTLSIDVDV LDDGYKWRKY GQKVVKNTQH PRSYYRCTEE 180 NCGVKKRVER LAEDPRMVIT TYEGRHVHTP SNHNNLYDSP SQFDNFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	147	208	13	74	Probable WRKY transcription factor 4
2lex_A	1e-26	147	208	13	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004504001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004504001.1	1e-172	probable WRKY transcription factor 12
TrEMBL	A0A1S2YGF7	1e-171	A0A1S2YGF7_CICAR; probable WRKY transcription factor 12
STRING	XP_004504001.1	1e-171	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4079	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	1e-47	WRKY DNA-binding protein 13