PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504176.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 148aa    MW: 16563 Da    PI: 8.869
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.33.8e-12633734
            GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    + TplWR+gp  ++ LCnaCG +yr+ g
  XP_004504176.1  6 SATPLWRQGPAEKPVLCNACGSRYRHWG 33
                    56********99999**********866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501148.51133IPR000679Zinc finger, GATA-type
SMARTSM004010.0083444IPR000679Zinc finger, GATA-type
PfamPF003207.2E-10633IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-9632IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.9E-7638No hitNo description
CDDcd002022.75E-9834No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDSSSSATPL WRQGPAEKPV LCNACGSRYR HWGTLDNYLP KHSIGKDLVV PHPIICTNNL  60
LFNFLGESSS SLWASTIPSK KRTRRGVYKR LTPMERFQKQ LLDELKLQGI PNEPSPEEVL  120
LFQNVNSFIP SNEIGLGGIL LERDGTSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504176.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191885.16e-98GATA transcription factor 26-like
TrEMBLA0A3Q7YGA21e-96A0A3Q7YGA2_CICAR; GATA transcription factor 26-like
STRINGXP_004504176.11e-106(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.27e-14GATA transcription factor 26