PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504217.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 847aa    MW: 93468.5 Da    PI: 6.6427
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-192078357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ +q+kvWFqNrR +ek+
  XP_004504217.1 20 KYVRYTPEQVEALERVYAECPKPTSSKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                    6789*****************************************************97 PP
2START158.93.9e-501693762204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++ +Wv+   +++g++++ +++ s+ +sg a+ra+g+v  +++  v+e+l+d++ W ++++  +++  + +g  g+++l 
  XP_004504217.1 169 IAEETLAEFLAKATGTAVNWVQIIGMKPGPDSIGIVAVSRDCSGVAVRACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVVSIVPTGngGTIELL 262
                     68999*******************************99999*****************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+r+l++g++vi+++S++s +  p    + ++vRae+l Sg+li+++++g+s v++v+hvdl+  +++++lr+l+
  XP_004504217.1 263 YMQTYAPTTLAAaRDFWTLRYTRSLEDGSLVICERSLTSLTGGPIgppTLNFVRAEMLSSGYLIRSCDGGGSIVHIVDHVDLDVCSVPEVLRPLY 357
                     ******************************************999999*********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_004504217.1 358 ESSKFLAQKMTIAALRHIK 376
                     ***************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-19778IPR009057Homeodomain-like
PROSITE profilePS5007115.9041579IPR001356Homeobox domain
SMARTSM003896.1E-161783IPR001356Homeobox domain
CDDcd000867.44E-172080No hitNo description
PfamPF000461.7E-162078IPR001356Homeobox domain
SuperFamilySSF466893.08E-162082IPR009057Homeodomain-like
CDDcd146861.79E-672111No hitNo description
PROSITE profilePS5084823.354159360IPR002913START domain
Gene3DG3DSA:3.30.530.207.5E-20168373IPR023393START-like domain
SMARTSM002348.3E-44168378IPR002913START domain
PfamPF018522.9E-47169377IPR002913START domain
SuperFamilySSF559613.3E-35169378No hitNo description
SuperFamilySSF559613.41E-6416501No hitNo description
SuperFamilySSF559613.41E-6529603No hitNo description
PfamPF086701.3E-45702846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MALCMHRDSS NKQQQMDSSK YVRYTPEQVE ALERVYAECP KPTSSKRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV SQLVYGNGFM  120
KQQIKTQASA TTTDNSCESV VMTGHNQQPI PKTQHSQWDA NNPAGLLAIA EETLAEFLAK  180
ATGTAVNWVQ IIGMKPGPDS IGIVAVSRDC SGVAVRACGL VSLEPTKVAE ILKDRPSWYR  240
DCRCLDVVSI VPTGNGGTIE LLYMQTYAPT TLAAARDFWT LRYTRSLEDG SLVICERSLT  300
SLTGGPIGPP TLNFVRAEML SSGYLIRSCD GGGSIVHIVD HVDLDVCSVP EVLRPLYESS  360
KFLAQKMTIA ALRHIKQIAL ESSGEVNYAG GRQPAVLRTF SQRLSKGFND AINGFVDDGW  420
SLIGNDGVED VTITINSSPN KYFGSHYNAS MLPAFGGGVM CAKASMLLKN VPPALLVRFL  480
REHRSEWADY GVDAYSATCL KASPFAVPCA RPGGFPSSQV ILPLAHTLEH EEFLEVVRIE  540
GHAFSPEDVA LARDMYLLQL CSGVDENSVG ACAQLVFAPI DESFADDALL LPSGFRIIPL  600
DPKADAPAAT RTLDLASALE IGSGNSHQAG EGDLNSYNIR SVLTIAFQFT FENHLRDNVA  660
AMARQYVRSV VRSVQRVAMA ISPSPFTQLG PKSLSGPPEA LTLAQWIYRS YRIHTSAELF  720
KVESMASDTI LKQLWHHSDA IMCCSIKTNA SPVFTFANQA GLDMLETTLV SLQDIMLDKV  780
LDEAGKKFIY FEFAKIMQQG FAYLXXGICV SSMNRPISYE QAIAWKVVDD NDCNHCLAFM  840
FVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504217.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504217.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S2YGM60.0A0A1S2YGM6_CICAR; homeobox-leucine zipper protein ATHB-14-like
STRINGXP_004504217.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]