PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504312.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 239aa    MW: 27257.7 Da    PI: 8.174
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504312.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-172777155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++ GVr++  +g+W+AeI+d s+   + r +lg++ taeeAa+a+++a+  l+g
  XP_004504312.2 27 SKFVGVRQRA-SGKWAAEIKDTSK---NIRMWLGTYKTAEEAARAYDEAACLLRG 77
                    79*****999.7*********544...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-312784No hitNo description
PfamPF008475.0E-122777IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-192786IPR016177DNA-binding domain
SMARTSM003807.6E-332891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-272885IPR001471AP2/ERF domain
PROSITE profilePS5103219.3882885IPR001471AP2/ERF domain
PRINTSPR003676.7E-72940IPR001471AP2/ERF domain
PRINTSPR003676.7E-75167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDMEYENKKC NQEDKHKAKL KMKKSGSKFV GVRQRASGKW AAEIKDTSKN IRMWLGTYKT  60
AEEAARAYDE AACLLRGSNT RTNFSTTHST PTNSPISLKL KSLINRKSIK SQSQSQSQPT  120
MMSSPNVNSI IDNNIMVVEN NSSCNSEDSK SLFWIQNQVS EYNPFGVDMN MINSSLGITP  180
NTLQIDYSWP LPQQKINELT TPKDNMNIYG INECYVEDIY ESKYEFDVNY PLSQLFCFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-152684362ATERF1
3gcc_A1e-152684362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504312.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504312.21e-179ethylene-responsive transcription factor ERN3
SwissprotA9Y0K91e-122ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLA0A1S2YGV01e-178A0A1S2YGV0_CICAR; ethylene-responsive transcription factor ERN3
STRINGXP_004504312.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-24related to AP2 11
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]