PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504507.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 244aa    MW: 28029.7 Da    PI: 7.3064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002680102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F ++  L  H++ H
  XP_004504507.1  80 FECQYCFKEFANSQALGGHQNAH 102
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-575106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.07E-676107No hitNo description
PROSITE profilePS5015711.40680107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEKEMCDISH TWDGENGNSV EKRLRLFGFE LNPTKNNEGL VKESNNEGDE SVNSSNSISS  60
GGEKIVEEKT STRGQDERKF ECQYCFKEFA NSQALGGHQN AHKKERMKKK RLQLQARKAS  120
INYYLQPFQT NNHHGSFANY HGNDTHNWFY DPSSYNNSEF SLCEESQISF KSNVHDTTNS  180
FVDQKSSWYS LPSHNPPSQQ DNCMFTFSNK DDRPFIFKPS SNQIHTKGLD LQLGLNLKSS  240
TKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504507.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1401041e-133BT140104.1 Medicago truncatula clone JCVI-FLMt-13L10 unknown mRNA.
GenBankCT0337631e-133CT033763.2 Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE.
GenBankCT0337671e-133CT033767.2 Medicago truncatula chromosome 5 clone mth2-175p8, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504507.10.0zinc finger protein 5
TrEMBLA0A1S2YH840.0A0A1S2YH84_CICAR; zinc finger protein 5
STRINGXP_004504507.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-16zinc finger protein 5