PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004504766.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 193aa MW: 22444.8 Da PI: 4.8069

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004504766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.7	3.9e-35	10	129	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeel+v++L++k++ +++ +vi+++d++ ++Pw+L+ ++ +e ++wy++s+r +nr+t++gyW g +++v+++ XP_004504766.1 10 LPPGFRFYPTDEELLVHFLHRKASLLPCHP-DVIPDLDLFPYDPWELHGRALEEGNQWYYYSRRT--------QNRITNNGYWMPMGMEEQVVTT 95 79***********************999.99**********977778899**984........589********9999987 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g+kk vf+ g++p+g+kt+W+m+eyrl XP_004504766.1 96 sTNKRLGIKKYYVFHLGQTPNGNKTNWIMQEYRL 129 67788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-46	7	161	IPR003441	NAC domain
PROSITE profile	PS51005	44.767	10	162	IPR003441	NAC domain
Pfam	PF02365	3.2E-21	11	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MGDNNNNVNL PPGFRFYPTD EELLVHFLHR KASLLPCHPD VIPDLDLFPY DPWELHGRAL 60 EEGNQWYYYS RRTQNRITNN GYWMPMGMEE QVVTTSTNKR LGIKKYYVFH LGQTPNGNKT 120 NWIMQEYRLS DSASSSRSSS SKRKSQPKSE HSRWVICRVY ESDDDEDGDG TELSCLDEVF 180 LSLDDLDEVS LPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-38	3	161	10	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-38	3	161	10	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-38	3	161	10	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-38	3	161	10	164	NO APICAL MERISTEM PROTEIN
3swm_A	1e-38	3	161	13	167	NAC domain-containing protein 19
3swm_B	1e-38	3	161	13	167	NAC domain-containing protein 19
3swm_C	1e-38	3	161	13	167	NAC domain-containing protein 19
3swm_D	1e-38	3	161	13	167	NAC domain-containing protein 19
3swp_A	1e-38	3	161	13	167	NAC domain-containing protein 19
3swp_B	1e-38	3	161	13	167	NAC domain-containing protein 19
3swp_C	1e-38	3	161	13	167	NAC domain-containing protein 19
3swp_D	1e-38	3	161	13	167	NAC domain-containing protein 19
4dul_A	1e-38	3	161	10	164	NAC domain-containing protein 19
4dul_B	1e-38	3	161	10	164	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004504766.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010423	2e-64	AP010423.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT16M14, TM1779, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004504766.1	1e-144	NAC domain-containing protein 104
Swissprot	Q8GWK6	7e-85	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1S2YH74	1e-142	A0A1S2YH74_CICAR; NAC domain-containing protein 104
STRING	XP_004504766.1	1e-143	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-78	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]