PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505000.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 466aa MW: 52893.4 Da PI: 9.9532

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	7	43	2	37
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.kgRtl 37 + W t+E++ll av ++G+++W+ +a+++ ++++ XP_004505000.1 7 MTWGTWEELLLGGAVLRHGTRNWTVVAAELRaRTLSP 43 57*****************************555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	5.7E-6	7	46	IPR001005	SANT/Myb domain
SuperFamily	SSF47370	1.26E-19	253	365	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	3.3E-16	254	363	IPR001487	Bromodomain
SMART	SM00297	4.2E-17	261	365	IPR001487	Bromodomain
CDD	cd04369	3.75E-14	264	360	No hit	No description
Pfam	PF00439	6.8E-11	269	349	IPR001487	Bromodomain
PROSITE profile	PS50014	9.601	276	346	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MGAEVMMTWG TWEELLLGGA VLRHGTRNWT VVAAELRART LSPYAITPEV CKAKYEDLQH 60 RYSGAWFEEL KKKRVAELKR ALEQSEDSIG SLESMLESLK ADKNEKRDDC RVDNDSVGLE 120 LQVPLQKSER VESSTKEMSK DGLSAGSFTH QSQTNWSHEC HIPAMSSEDM EIKPEGSGSI 180 EHEKVLNVDK LTHTLYETQG GSFKKRRGKR KRKDCGRKIN EASVRESDFS FDASWFKESS 240 TSNCGEVVKS SGITEENTKL KKDEMKDMME ILDSVLEIKG AFAFCRKHDS QKRARYRMLI 300 RRHMDFDAIR SRISNQTINS VMELFRDMLL LANNALVFYS KNTRQYKYAL LLRDIVTQKL 360 RENVKFFSRS VMHANVSNSI ILPVHDSSLN VRSVRSGNRK IIVAEAADGS NPAIAISNGA 420 KKPSSKEDSP CSVKTLHIKK AFGGPKKLEP ATPMKEMKEK TRRRTK

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MGAEVMMTWG TWEELLLGGA VLRHGTRNWT VVAAELRART LSPYAITPEV CKAKYEDLQH  60
RYSGAWFEEL KKKRVAELKR ALEQSEDSIG SLESMLESLK ADKNEKRDDC RVDNDSVGLE  120
LQVPLQKSER VESSTKEMSK DGLSAGSFTH QSQTNWSHEC HIPAMSSEDM EIKPEGSGSI  180
EHEKVLNVDK LTHTLYETQG GSFKKRRGKR KRKDCGRKIN EASVRESDFS FDASWFKESS  240
TSNCGEVVKS SGITEENTKL KKDEMKDMME ILDSVLEIKG AFAFCRKHDS QKRARYRMLI  300
RRHMDFDAIR SRISNQTINS VMELFRDMLL LANNALVFYS KNTRQYKYAL LLRDIVTQKL  360
RENVKFFSRS VMHANVSNSI ILPVHDSSLN VRSVRSGNRK IIVAEAADGS NPAIAISNGA  420
KKPSSKEDSP CSVKTLHIKK AFGGPKKLEP ATPMKEMKEK TRRRTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	KKRRGK
2	205	213	RRGKRKRKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505000.1	0.0	uncharacterized protein LOC101514166 isoform X2
TrEMBL	A0A1S2YII7	0.0	A0A1S2YII7_CICAR; uncharacterized protein LOC101514166 isoform X2
STRING	XP_004504999.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	1e-28	DNA-binding bromodomain-containing protein