PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505050.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 202aa    MW: 23642 Da    PI: 7.7672
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.35.9e-34321212102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++le+   +e++sw+e+gn+fvv+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weF+h++F+kg k++l +
  XP_004505050.1  32 FLLKTYDLLEE--HSEIVSWNEQGNAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKR---------WEFQHEKFQKGCKHMLVE 115
                     9********97..679*************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i rkk 
  XP_004505050.1 116 ISRKKC 121
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-4228119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.3E-3529114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-2929119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.3E-3032119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-96880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-98193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGENVMELNF GSLANFSSSS SSPKPLRCPA PFLLKTYDLL EEHSEIVSWN EQGNAFVVWS  60
PAEFSELTLP RYFKHNNFSS FIRQLNTYGF KKISSKRWEF QHEKFQKGCK HMLVEISRKK  120
CEPSVFPSYL KSCSEENAMT NSSVEENISN NHELLMEENK NLKKERLKLQ MQIEECKTLE  180
MKLLECLSQY MDSQQNKARR LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A4e-17281197110Heat shock factor protein 2
5hdk_B4e-17281197110Heat shock factor protein 2
5hdk_C4e-17281197110Heat shock factor protein 2
5hdk_D4e-17281197110Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505050.11e-147heat stress transcription factor B-2a
TrEMBLA0A1S2YHX31e-145A0A1S2YHX3_CICAR; heat stress transcription factor B-2a
STRINGXP_004505050.11e-146(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-39heat shock factor 4