PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505267.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 228aa    MW: 26310.9 Da    PI: 8.0654
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1972126256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Lee F+kn++++ +++e LA++l+L  rqV vWFqNrRa+ k
  XP_004505267.1  72 RKKLRLTKEQSHLLEEIFRKNHTLNPRQKECLAMQLKLRPRQVEVWFQNRRARSK 126
                     78889************************************************98 PP
2HD-ZIP_I/II114.65.9e-3772161191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEe F+++++L+p++K+ la +L+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n+rL++eveeLr +l
  XP_004505267.1  72 RKKLRLTKEQSHLLEEIFRKNHTLNPRQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTELECEYLKRWFGTLTEQNRRLQREVEELR-AL 161
                     69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-1852126IPR009057Homeodomain-like
SuperFamilySSF466893.89E-1960129IPR009057Homeodomain-like
PROSITE profilePS5007116.8668128IPR001356Homeobox domain
SMARTSM003895.7E-1670132IPR001356Homeobox domain
CDDcd000861.50E-1571129No hitNo description
PfamPF000461.2E-1672126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PfamPF021837.5E-9128162IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-20128171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAVLPTNSSG LELSISVPGF ASSPTTFLHS SSVKKLDMNQ LPIEEGWINM SSNWNLEEED  60
EQENSNGDHP PRKKLRLTKE QSHLLEEIFR KNHTLNPRQK ECLAMQLKLR PRQVEVWFQN  120
RRARSKLKQT ELECEYLKRW FGTLTEQNRR LQREVEELRA LKVDPPTVLS PYSCEPLPAS  180
TLSMCPRCER VTTNVTATNN KPTNDVVNNL SHNIPIHTLQ CVKYETSC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505267.11e-168homeobox-leucine zipper protein HOX3
SwissprotQ0JKX14e-75HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ8S9N66e-75ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
SwissprotQ9XH384e-75HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1S2YIY21e-167A0A1S2YIY2_CICAR; homeobox-leucine zipper protein HOX3
STRINGXP_004505267.11e-167(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-77homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]