PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505344.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 177aa    MW: 19553.5 Da    PI: 7.8638
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.5e-14801403797
                     EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                     t+ + +g+sW++ +  ++++++  + t GW++F+k+n +k+gD +vF+l+++ ++  + v+++
  XP_004505344.1  80 TVLNYHGKSWDMIY--NGQKKAkQFDTFGWRKFAKDNCVKVGDACVFELMESkEKIIFEVQIL 140
                     67899*********..554444456789********************998656555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1343141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1443141IPR015300DNA-binding pseudobarrel domain
CDDcd100178.37E-1445141No hitNo description
SMARTSM010192.0E-747143IPR003340B3 DNA binding domain
PfamPF023626.8E-1280138IPR003340B3 DNA binding domain
PROSITE profilePS5086311.23780143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSSSESGRRV SSCRIVVENQ TASPPPSIPT TNMQRVGIKP LSGKPYFHAI ILKTHLSPRF  60
TLGPSSKICS KLPSGAAVPT VLNYHGKSWD MIYNGQKKAK QFDTFGWRKF AKDNCVKVGD  120
ACVFELMESK EKIIFEVQIL RGDFPCEFPG INESEEEPIV LSELIGTGES EAPFVID
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505344.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505344.11e-129B3 domain-containing protein Os04g0386900-like isoform X1
TrEMBLA0A1S2YIM01e-128A0A1S2YIM0_CICAR; B3 domain-containing protein Os04g0386900-like isoform X1
STRINGXP_004505344.11e-129(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-07B3 family protein