PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505393.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WOX

Protein Properties

Length: 375aa MW: 41528.8 Da PI: 6.3188

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.9e-18	54	114	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ XP_004505393.1 54 KPRWNPKPEQIRILEAIFNSgMVNPPREEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 114 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.9	3.3e-36	53	115	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P++eei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k XP_004505393.1 53 PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 115 689**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-7	40	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.706	50	115	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.17E-12	50	117	IPR009057	Homeodomain-like
SMART	SM00389	4.8E-9	52	119	IPR001356	Homeobox domain
CDD	cd00086	1.11E-8	53	115	No hit	No description
Pfam	PF00046	9.0E-16	54	114	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MASSNKHWPS MFKKSSKTSN HLNWQHGINS SLLSTAFQRT PTSGAGDERS PEPKPRWNPK 60 PEQIRILEAI FNSGMVNPPR EEIRKIRAQL QEYGQVGDAN VFYWFQNRKS RSKHKLRHLH 120 NSKTNKNKNP ESSNSSNSLP QITAPPSSSS SDKKANNEFS NIGFSNGVVV SNSPTTTTSV 180 DQNQASGFFQ TPFYNFPVEN NNNDGMTTQG FYLPEFSNII HHQDLPQQNV VPLVNDQIMI 240 MNFANENRNG TSSSMKDQQG QDIQDPQLSF CDTSASSTED PTLVPHIPIT NAADVTVPPS 300 ITDQLQGVGE EADGRAKCTV IINDVVFEVD VGPFNVREAF GDGAVLFDST GHPILTDDWG 360 VTLHSLHHGA SYYLI

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MASSNKHWPS MFKKSSKTSN HLNWQHGINS SLLSTAFQRT PTSGAGDERS PEPKPRWNPK  60
PEQIRILEAI FNSGMVNPPR EEIRKIRAQL QEYGQVGDAN VFYWFQNRKS RSKHKLRHLH  120
NSKTNKNKNP ESSNSSNSLP QITAPPSSSS SDKKANNEFS NIGFSNGVVV SNSPTTTTSV  180
DQNQASGFFQ TPFYNFPVEN NNNDGMTTQG FYLPEFSNII HHQDLPQQNV VPLVNDQIMI  240
MNFANENRNG TSSSMKDQQG QDIQDPQLSF CDTSASSTED PTLVPHIPIT NAADVTVPPS  300
ITDQLQGVGE EADGRAKCTV IINDVVFEVD VGPFNVREAF GDGAVLFDST GHPILTDDWG  360
VTLHSLHHGA SYYLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505393.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505393.1	0.0	WUSCHEL-related homeobox 9-like isoform X2
TrEMBL	A0A1S2YJD3	0.0	A0A1S2YJD3_CICAR; WUSCHEL-related homeobox 9-like isoform X2
STRING	XP_004505393.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	6e-62	WUSCHEL related homeobox 8