PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505394.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 296aa MW: 33700.7 Da PI: 8.551

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.6	2.9e-31	17	111	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++rrkC++dCvlapyfp ++ + ++ vhk+FG snv k+l++l+++ r++a++s +eA ++a++Pv G +g +++ + + ql + l+ XP_004505394.1 17 ACAACRHQRRKCTQDCVLAPYFPIDKIHVYESVHKVFGFSNVAKMLTKLDQQGRKQAIKSFEWEAMMWAQNPVFGPFGAYNEALNIITQLLTLLQ 111 7******************************************************************************9998888888766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.242	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-30	17	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAKRNKPWNG SNTSNPACAA CRHQRRKCTQ DCVLAPYFPI DKIHVYESVH KVFGFSNVAK 60 MLTKLDQQGR KQAIKSFEWE AMMWAQNPVF GPFGAYNEAL NIITQLLTLL QQQQTFSTSE 120 PKFRGQAHDS LLFSNEALQV SNNVNWAPFV DNNNVVQNNP SFSYPYVHSF EGDLHNVEPK 180 IFNCVPDANV FLHQKSAILQ PNYFQNIASV SGSNNNVVTS STIDQQSQVR DFQCYDGNVE 240 NIYKTKGYGR EYAAVVQKSE KSIVDHTMAQ NRARSKIEEF QHPIYYSVGN SRPKQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-18	18	97	12	91	LOB family transfactor Ramosa2.1
5ly0_B	3e-18	18	97	12	91	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505394.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505394.1	0.0	LOB domain-containing protein 12-like
TrEMBL	A0A1S2YIR3	0.0	A0A1S2YIR3_CICAR; LOB domain-containing protein 12-like
STRING	XP_004505394.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14786	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	7e-24	LOB domain-containing protein 2