PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505503.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 251aa    MW: 28224.2 Da    PI: 5.4525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-1265111354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+++P a      K++Ka+ L +++ ++k+L
  XP_004505503.1  65 KNHSEAERRRRARINAHLDTLRSVIPGA-----LKMDKASLLGEVILHLKEL 111
                     58*************************7.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.56762111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-1065111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1265113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1266115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1268117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.16E-475113No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-5150197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEMEDFDWSY DILGDGFQVN NEVFGSGYGS SFSLVLDRER DELVEAPAKM EKKGVSNERS  60
IEALKNHSEA ERRRRARINA HLDTLRSVIP GALKMDKASL LGEVILHLKE LKRNAAQACE  120
GLIIPKDNDE ISVEEQEGGI YGFPFSIRAS LCCEYQPGLL SNIRQALESL HLMIMKADIA  180
TFGGRMKNVF VVISCEEQNL DVAEYRQFLA GSVHQALKSV LNRFSVSQDM LGARKRRRIS  240
IFSSSSLEDF L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237RKRRR
2234238KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352311e-159AC135231.23 Medicago truncatula clone mth2-28m10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505503.10.0transcription factor bHLH30-like
TrEMBLA0A1S2YJL30.0A0A1S2YJL3_CICAR; transcription factor bHLH30-like
STRINGXP_004505503.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-32bHLH family protein