PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505626.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 202aa MW: 23290.1 Da PI: 8.643

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.3	2e-36	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC+++C+lapyfp++++ +f++vhk+FG+sn++kl+k+++e++r+++++sl++eA +r+rdP++G +g ++k+ ++++++ el+ XP_004505626.1 13 ACAACKHQRKKCSENCILAPYFPSNRNCDFKAVHKVFGVSNITKLVKNVQESDRRRVVDSLIWEASCRQRDPIHGPYGEYTKVYNEYRKVYDELN 107 7********************************************************************************************99 PP DUF260 96 llke 99 l+e XP_004505626.1 108 ILRE 111 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.462	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-35	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MQTSNNNNGM HQACAACKHQ RKKCSENCIL APYFPSNRNC DFKAVHKVFG VSNITKLVKN 60 VQESDRRRVV DSLIWEASCR QRDPIHGPYG EYTKVYNEYR KVYDELNILR EHQNQLLQMP 120 PQGLRSVQDL IACNGTQSKS AAHNAINYLH SDHNMNASTI YNAYRANYLQ NIENVRTEVV 180 IPFQHQHSQP QAYYITGDGF NQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-21	3	120	1	123	LOB family transfactor Ramosa2.1
5ly0_B	1e-21	3	120	1	123	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505626.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027191202.1	1e-145	LOB domain-containing protein 2-like
TrEMBL	A0A3Q7YC80	1e-144	A0A3Q7YC80_CICAR; LOB domain-containing protein 2-like
STRING	XP_004505626.1	1e-151	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12722	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-38	LOB domain-containing protein 2