PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505663.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 446aa    MW: 50623.6 Da    PI: 6.585
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.68e-130264431374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++ +le+a+a+L+++s laspdgd+mqR+aayfteALa r+++++++l kal++++     +see+ ++klf+e++P+lk+ +
  XP_004505663.1  26 LIHLLLTCANHVAACNLENANATLEQISMLASPDGDTMQRIAAYFTEALADRILQTWPGLHKALNSTRMV--MVSEEILVQKLFFELFPFLKIVF 118
                     689*************************************************************998886..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege++       i +++QW+aLlq L++Rpegpp+lRiTgv++    +ke l ++++rL + Ae+l++pf+fn+ v+++le+l+
  XP_004505663.1 119 VLTNQAIIEAMEGEKM-------ICEPAQWIALLQVLSARPEGPPHLRITGVHR----KKEVLDTIAHRLIEEAEKLDIPFQFNP-VVSKLENLD 201
                     ***************9.......69*****************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll............................................................desvsleserd 225
                     +++Lrvk+gEala+++ lqlh ll                                                            ++s+s++   +
  XP_004505663.1 202 FDKLRVKTGEALAISSTLQLHALLafddetmkkksplllkssngvhlqrfkpmnqstlgdllekdmvngytrspdstslspaslNSSTSMNM--E 294
                     ********************************************************************************998766666655..8 PP

            GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                     ++L+ ++ lsPkv+vv+eq+++hn++++++r+leal+ y+alfd+le++++r+s er  vE++l+g+ei+n++aceg er+erhe+l kW +r++
  XP_004505663.1 295 SFLNGLWCLSPKVMVVTEQDSNHNGSTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIIACEGYERKERHEKLDKWFMRFD 389
                     9********************************************************************************************** PP

            GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      aGF++vpls++ + qa++ ++ ++ +gyr++ee+g++v++W+dr+L+svSaWr
  XP_004505663.1 390 LAGFGNVPLSYFGMLQARRFMQGYGCEGYRMKEENGCVVICWQDRSLFSVSAWR 443
                     *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.8961423IPR005202Transcription factor GRAS
PfamPF035142.8E-12726443IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSLSPSLGSP HPWLRELKSE ERGLYLIHLL LTCANHVAAC NLENANATLE QISMLASPDG  60
DTMQRIAAYF TEALADRILQ TWPGLHKALN STRMVMVSEE ILVQKLFFEL FPFLKIVFVL  120
TNQAIIEAME GEKMICEPAQ WIALLQVLSA RPEGPPHLRI TGVHRKKEVL DTIAHRLIEE  180
AEKLDIPFQF NPVVSKLENL DFDKLRVKTG EALAISSTLQ LHALLAFDDE TMKKKSPLLL  240
KSSNGVHLQR FKPMNQSTLG DLLEKDMVNG YTRSPDSTSL SPASLNSSTS MNMESFLNGL  300
WCLSPKVMVV TEQDSNHNGS TLMDRLLEAL YSYAALFDCL ESTVSRTSLE RLRVEKMLFG  360
EEIKNIIACE GYERKERHEK LDKWFMRFDL AGFGNVPLSY FGMLQARRFM QGYGCEGYRM  420
KEENGCVVIC WQDRSLFSVS AWRSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3694451380Protein SCARECROW
5b3h_D2e-3694451380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1533510.0AC153351.24 Medicago truncatula clone mth2-103a3, complete sequence.
GenBankAC2025720.0AC202572.7 Medicago truncatula clone mth2-161l14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505663.10.0scarecrow-like protein 3
RefseqXP_004505664.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S2YJT50.0A0A1S2YJT5_CICAR; scarecrow-like protein 3
STRINGXP_004505663.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]