PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505671.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 446aa MW: 49068.6 Da PI: 5.4453

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	380.8	1.7e-116	78	437	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 lLl+cAe+v+ ++l a+ lL ++ el+sp g++ +R+ ayf++AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ vsP++kfsh+t XP_004505671.1 78 GLLLQCAECVAMDNLDFANDLLPEITELSSPFGTSPERVGAYFAQALQARVVSSCLSSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFT 172 58****************************************************************999******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aNqaI +av+ge+rvHiiD+di+qGlQWp L++ LasR+++ s+RiTg+gs s+e le+tg+rLa+fA++lg+pfef+++ k + e++ XP_004505671.1 173 ANQAIFQAVDGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSVRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTEPS 263 ************************************************....9**********************8777777789 PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +L v+p+Ea++V++++ h l+d ++s +L+l+ +l+Pk+++ veq+++h ++sFl+rf+eal+yysalfd+l +l+++s er+ vE+ XP_004505671.1 264 QLGVRPNEAIVVHWMH--HCLYDITGSDLG----TLRLLSQLRPKLITTVEQDLSH-AGSFLARFVEALHYYSALFDALGDGLGADSVERHLVEQ 351 ************99..777777777777....******************.899******************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +llg ei+n++a g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+ +SaW+ XP_004505671.1 352 QLLGCEIRNIIAVGGPKRTGEVK-VERWGDELKRVGFQPVSLRGNPASQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQ 437 *************998887.9***********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.393	50	417	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.8E-114	78	437	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048366	Biological Process	leaf development
GO:0090610	Biological Process	bundle sheath cell fate specification
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MLQSLVPLPP LTSKPNNSMK AKRAEREHDD ADSNVQEPSF KRPNYSSEKT VAEGEGHEEV 60 QAFEPQIEGE STGLKLLGLL LQCAECVAMD NLDFANDLLP EITELSSPFG TSPERVGAYF 120 AQALQARVVS SCLSSYSPLT AKSVTLTQSQ RIFNAFQSYN SVSPLVKFSH FTANQAIFQA 180 VDGEDRVHII DLDIMQGLQW PGLFHILASR SKKIRSVRIT GFGSSSELLE STGRRLADFA 240 SSLGLPFEFH PVEGKIGSVT EPSQLGVRPN EAIVVHWMHH CLYDITGSDL GTLRLLSQLR 300 PKLITTVEQD LSHAGSFLAR FVEALHYYSA LFDALGDGLG ADSVERHLVE QQLLGCEIRN 360 IIAVGGPKRT GEVKVERWGD ELKRVGFQPV SLRGNPASQA SLLLGMFPWR GYTLVEENGS 420 LKLGWKDLSL LIASAWQPSD LITYTD

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MLQSLVPLPP LTSKPNNSMK AKRAEREHDD ADSNVQEPSF KRPNYSSEKT VAEGEGHEEV  60
QAFEPQIEGE STGLKLLGLL LQCAECVAMD NLDFANDLLP EITELSSPFG TSPERVGAYF  120
AQALQARVVS SCLSSYSPLT AKSVTLTQSQ RIFNAFQSYN SVSPLVKFSH FTANQAIFQA  180
VDGEDRVHII DLDIMQGLQW PGLFHILASR SKKIRSVRIT GFGSSSELLE STGRRLADFA  240
SSLGLPFEFH PVEGKIGSVT EPSQLGVRPN EAIVVHWMHH CLYDITGSDL GTLRLLSQLR  300
PKLITTVEQD LSHAGSFLAR FVEALHYYSA LFDALGDGLG ADSVERHLVE QQLLGCEIRN  360
IIAVGGPKRT GEVKVERWGD ELKRVGFQPV SLRGNPASQA SLLLGMFPWR GYTLVEENGS  420
LKLGWKDLSL LIASAWQPSD LITYTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-163	82	438	24	379	Protein SCARECROW
5b3h_D	1e-163	82	438	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505671.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505671.1	0.0	scarecrow-like protein 23
Swissprot	Q9FHZ1	0.0	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	A0A1S2YJD6	0.0	A0A1S2YJD6_CICAR; scarecrow-like protein 23
STRING	XP_004505671.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2068	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	0.0	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]