PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505954.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 202aa MW: 22416.3 Da PI: 4.4285

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.7e-42	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+ +l+a+la XP_004505954.1 33 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPEDQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVIELQAQLA 127 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_004505954.1 128 KAQAE 132 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.954	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-42	33	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MECSDTTNSS APFFHYSPTS SSSSPIPQVV MSPCAACKIL RRRCADKCVL APYFPPTEPA 60 KFTIAHRVFG ASNIIKFLQE LPEDQRADAV TSMVYEASAR IRDPVYGCAG AICQLQKQVI 120 ELQAQLAKAQ AEVVNMQLQQ ANLVALICME MSQSPQESPQ QSLDNNNNND DDFINPSTPY 180 SSNYQIGLNF LEENSLWEPL WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-41	32	135	10	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-41	32	135	10	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097175	1e-121	BT097175.1 Soybean clone JCVI-FLGm-21N19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505954.1	1e-149	LOB domain-containing protein 1-like
Swissprot	Q9SK08	1e-75	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1S2YKD3	1e-148	A0A1S2YKD3_CICAR; LOB domain-containing protein 1-like
STRING	XP_004505954.1	1e-149	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-61	LOB domain-containing protein 1