PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505981.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YC
Protein Properties Length: 193aa    MW: 21894.6 Da    PI: 10.1745
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505981.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC452.3e-14891771199
           NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     e +++ k h +P+ ri+ ilk +    ++s ea   + ka e f+ +l+  ++  + +n++++l  + ++ +v++   +dfl d vp++
  XP_004505981.2  89 EGEEEAKTHVFPMNRIRTILKGEISDLRVSQEAILAINKATEKFLEQLAQEAYACSVQNRKKSLSYNHLSHVVSKQRRYDFLSDFVPEK 177
                     6678899****************99999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.65E-1790175IPR009072Histone-fold
PfamPF008083.7E-1399161IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.2E-2299176IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTVVRKVLLS SSSSMASSNN SIAENKKSKN TETSTPTSKI KKERDIEKSK EKKKNSKNKK  60
LKLSNGNSKE HEEDKGKQRE HEVEEGGGEG EEEAKTHVFP MNRIRTILKG EISDLRVSQE  120
AILAINKATE KFLEQLAQEA YACSVQNRKK SLSYNHLSHV VSKQRRYDFL SDFVPEKVKA  180
EDALRETDSR GNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505981.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182991e-107JQ918299.1 Medicago truncatula nuclear transcription factor Y subunit C7 (NF-YC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505981.21e-137nuclear transcription factor Y subunit C-2
TrEMBLA0A1S2YK311e-136A0A1S2YK31_CICAR; nuclear transcription factor Y subunit C-2
STRINGXP_004505981.11e-136(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.16e-29nuclear factor Y, subunit C10