PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506004.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 486aa    MW: 53565.2 Da    PI: 7.9558
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17158207155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_004506004.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                     78*******************......55************************997 PP
2AP242.31.9e-13250298153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k 
  XP_004506004.1 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEVEAARAYDKAAIKN 298
                     89********.7******5553..2.26**********99**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-15158216IPR016177DNA-binding domain
PfamPF008475.6E-9158207IPR001471AP2/ERF domain
SMARTSM003808.6E-31159221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16159215IPR001471AP2/ERF domain
CDDcd000181.23E-10159214No hitNo description
PROSITE profilePS5103217.411159215IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16250309IPR016177DNA-binding domain
CDDcd000183.01E-24250310No hitNo description
PfamPF008471.2E-8250298IPR001471AP2/ERF domain
SMARTSM003801.6E-28251314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-15251308IPR001471AP2/ERF domain
PROSITE profilePS5103215.33251308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLDLNLNDAN STDSTQNNDS PMISEKFPQT SWNQMVESGT SNSSIVNAGG SSNNANDEDS  60
CSTRADDAFT FNFDILKVEG SNSNDIVTKE LFPDSGGGDE RWSKNLQWQN TSSFPTRNGT  120
SVDLSFKQLC GNEEMKMVQV QPQQQAKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVGA DINFNLNDYD DDLQQAKNLS KEEFVHILRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDTEVEAARA YDKAAIKNNA  300
REAVTNFEPS TYEGELKSTA IIEGGSQNLD LNLGIATPGT GPKENLGKFH FPSIPYTMQA  360
GRSSMMETNV SGIGNPSLKR LLWNGMSPAF FPNEERAESI SKDPSKGLPN WGWQTHGQVT  420
ATPLPAVSIA ASSGFSISPP SFPSTAIFPP RSMNSIPQSL YFTSSNAPSS NALQNYYQVN  480
PPQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191944.10.0ethylene-responsive transcription factor RAP2-7
SwissprotQ9SK031e-118RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3Q7XEL80.0A0A3Q7XEL8_CICAR; ethylene-responsive transcription factor RAP2-7
STRINGXP_004506004.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-134related to AP2.7