PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506057.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 320aa    MW: 36521.7 Da    PI: 7.0241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
   XP_004506057.1 14 RGPWSPEEDSKLKEYIEKHGTGgNWISLPNKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding383.9e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_004506057.1  69 GDFSDEEDRIICSLYVNIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.733962IPR017930Myb domain
SuperFamilySSF466894.69E-2711109IPR009057Homeodomain-like
SMARTSM007177.7E-131364IPR001005SANT/Myb domain
PfamPF002494.0E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-241569IPR009057Homeodomain-like
CDDcd001678.36E-101662No hitNo description
PROSITE profilePS5129421.04163117IPR017930Myb domain
SMARTSM007176.2E-1167115IPR001005SANT/Myb domain
PfamPF002499.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAPCCDKT SVKRGPWSPE EDSKLKEYIE KHGTGGNWIS LPNKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRIIC SLYVNIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
QLPISHQRKS PFPPPNSSHL FSLDYFSHTP IPFTNLEPIS LPSNNNNNYA NTSFTPFYQN  180
QEYSMISVNN PMQYNYPIKD NMFMFGSEGS CSSSDGSCTL SHGKEIKQEE NIGYHHMSSN  240
GFDDYNNNFM ISCNNGGENI NQYEEKSSGV GYTNGQSQTL TPLLDYGLED IKQLICSNNK  300
GFNVDEIHKI EENGMYYYHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945871e-119BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506057.10.0transcription factor RAX2-like
TrEMBLA0A1S2YK870.0A0A1S2YK87_CICAR; transcription factor RAX2-like
STRINGXP_004506057.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36