PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004506183.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YB

Protein Properties

Length: 133aa MW: 14930 Da PI: 5.1498

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004506183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	45.5	1.9e-14	5	99	6	95
NF-YB 6 rflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++lP + v r++k l + ++ i+ kda e + fi ++++ a+d c++ kr+ in++d++ al + f ++v plk+ l+++r+ ++ XP_004506183.1 5 EELPKTIVRRVVKDKLSTcseDGDIAvhKDALXXXSESARIFIHYISATANDICKESKRQIINAEDVFKALEETEFTEFVSPLKASLEEFRKKNA 99 67899999999999886422245554339999***********************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-30	3	127	IPR009072	Histone-fold
Pfam	PF00808	1.5E-9	6	75	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.13E-23	7	122	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MAEAEELPKT IVRRVVKDKL STCSEDGDIA VHKDALXXXS ESARIFIHYI SATANDICKE 60 SKRQIINAED VFKALEETEF TEFVSPLKAS LEEFRKKNAG KKAAVSKEKG DEKNKKRKLE 120 TEPSDKGDGE DDQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004506183.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918277	1e-114	JQ918277.1 Medicago truncatula nuclear transcription factor Y subunit B4 (NF-YB4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004506183.1	2e-88	DNA polymerase epsilon subunit 3
TrEMBL	A0A1S2YKK3	6e-87	A0A1S2YKK3_CICAR; DNA polymerase epsilon subunit 3
STRING	XP_004506183.1	9e-88	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	6e-40	nuclear factor Y, subunit B11