PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004506197.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 272aa MW: 31316.8 Da PI: 4.7894

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004506197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141.4	5.4e-44	6	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p G+rF Pt+eelv +yL+kk++g+ +++++vi+ +di+ vePw+Lp+ ++ e+++w+fFs+ ++++a+g r+nr+t+ gyWkatg+ v XP_004506197.1 6 PTGYRFFPTEEELVGFYLNKKLQGEVNDIDKVIPVIDINGVEPWNLPSlageLCRDEKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYV 100 89*************************999***********545654444677******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ XP_004506197.1 101 YSSDNKVIGVKKSMVFYKGKAPSGNKTKWKMNEYRA 136 ********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-45	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	46.693	5	162	IPR003441	NAC domain
Pfam	PF02365	5.5E-23	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MVEHIPTGYR FFPTEEELVG FYLNKKLQGE VNDIDKVIPV IDINGVEPWN LPSLAGELCR 60 DEKEQWFFFS PGQEREARGG RPNRTTACGY WKATGSPGYV YSSDNKVIGV KKSMVFYKGK 120 APSGNKTKWK MNEYRAIQIS NQSNIATPQL RREFSLCRVY VISGSFRAFD RRPLEKERVY 180 ELQVRDIDQN QFGATCTHNQ AAKMDALSSF EISQFEGLHS THMLEDVGGS SSTNWTLNNN 240 DNDNDNDNDN DNDELLLQEP LWEWECENFK WP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	5	160	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	5	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	5	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	5	160	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	3e-32	5	160	20	166	NAC domain-containing protein 19
3swm_B	3e-32	5	160	20	166	NAC domain-containing protein 19
3swm_C	3e-32	5	160	20	166	NAC domain-containing protein 19
3swm_D	3e-32	5	160	20	166	NAC domain-containing protein 19
3swp_A	3e-32	5	160	20	166	NAC domain-containing protein 19
3swp_B	3e-32	5	160	20	166	NAC domain-containing protein 19
3swp_C	3e-32	5	160	20	166	NAC domain-containing protein 19
3swp_D	3e-32	5	160	20	166	NAC domain-containing protein 19
4dul_A	2e-32	5	160	17	163	NAC domain-containing protein 19
4dul_B	2e-32	5	160	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004506197.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004506197.1	0.0	NAC domain-containing protein 90
TrEMBL	A0A1S2YKK4	0.0	A0A1S2YKK4_CICAR; NAC domain-containing protein 90
STRING	XP_004506197.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-80	NAC domain containing protein 90