PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506259.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 155aa    MW: 18088.4 Da    PI: 10.4725
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1389132347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT+eE+el++++ +++ +g  k Ia++ g +Rt  q+ s+ qk+
   XP_004506259.1  89 HWTKEEHELFLQGLRLYNKGELKNIAKHAG-TRTSTQVASHAQKH 132
                      6*****************************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-981136IPR009057Homeodomain-like
PROSITE profilePS5129416.76181137IPR017930Myb domain
SuperFamilySSF466893.81E-1584136IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-1185136IPR006447Myb domain, plants
SMARTSM007175.8E-1086135IPR001005SANT/Myb domain
PfamPF002493.6E-1189132IPR001005SANT/Myb domain
CDDcd001672.81E-1090133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MIKRPKYHFH TTNNMDDIID PNSIHTMHMS STRPNQSLSP FQQSHFNYPN SINRNSIDVE  60
FPTCSDYNAN LANQNKASPP KKEKKKVKHW TKEEHELFLQ GLRLYNKGEL KNIAKHAGTR  120
TSTQVASHAQ KHFNRQTLTP EKRKRKSIYD MTLGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506259.11e-114transcription factor DIVARICATA-like
TrEMBLA0A1S2YKQ81e-113A0A1S2YKQ8_CICAR; transcription factor DIVARICATA-like
STRINGXP_004506259.11e-113(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1935635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.13e-15MYB_related family protein