PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506260.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 131aa    MW: 15448.3 Da    PI: 6.8031
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-1066108447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT  E+ l++++ +++ +g  k Ia++ g +Rt  q+ s+ qky
   XP_004506260.1  66 WTSNEHWLFLQGLRLYNKGELKNIAKHAG-TRTSTQVASHAQKY 108
                      *****************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.01958113IPR017930Myb domain
SMARTSM007171.3E-462111IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-1364111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-565112IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-1266112IPR006447Myb domain, plants
PfamPF002492.8E-866108IPR001005SANT/Myb domain
CDDcd001679.72E-666109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEDIIDHYSI PMMPIFSAMP NQSLESFQQS HFHYPNSINI DPIDVELSTY SDYNDLANRN  60
EAFPYWTSNE HWLFLQGLRL YNKGELKNIA KHAGTRTSTQ VASHAQKYFN RKTLTPEKRK  120
RKSIYDMTLE E
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506260.11e-95transcription factor MYBS2-like
TrEMBLA0A1S2YL323e-94A0A1S2YL32_CICAR; transcription factor MYBS2-like
STRINGXP_004506260.15e-95(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1935635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-17MYB family protein