PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506361.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 358aa    MW: 41403 Da    PI: 7.7371
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.8e-5491381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++k+k     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk +
  XP_004506361.1   9 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQEKCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 102
                     69****************************.99**************964444222455************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + +++g++ktLvfykgrap+g+ktdW+mheyrle
  XP_004506361.1 103 RN-TYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138
                     *9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-598157IPR003441NAC domain
PROSITE profilePS5100557.7849157IPR003441NAC domain
PfamPF023655.7E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGSSNNGGVP PGFRFHPTDE ELLHYYLKKK VSFQKFDMDV IREVDLNKME PWDLQEKCKI  60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNTYKKIG MRKTLVFYKG  120
RAPHGQKTDW IMHEYRLEDA NDPTNEEGWV VCRVFKKKNL FKIGSEGVST HNHQEQQQMN  180
INISSGTNPR SFMHRENQYL LHHQQQQNHS AGFEHEKPEL SLHYQHLQQN SQYSSLFQSQ  240
SLLHAQKPLE VNFDYSYASS SLHSEQPITV KQLMTNPRDC ESGSDGLRYQ VSESGIEVGS  300
CEPPRSGGDG MNEWGMLDRL VNEDSTKLGG SRFEDANNHQ INQLSLRGEM DIWGYGKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-51915917167NO APICAL MERISTEM PROTEIN
1ut4_B1e-51915917167NO APICAL MERISTEM PROTEIN
1ut7_A1e-51915917167NO APICAL MERISTEM PROTEIN
1ut7_B1e-51915917167NO APICAL MERISTEM PROTEIN
4dul_A1e-51915917167NAC domain-containing protein 19
4dul_B1e-51915917167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506361.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506361.10.0protein BEARSKIN2
SwissprotQ9SV871e-144BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A1S2YL020.0A0A1S2YL02_CICAR; protein BEARSKIN2
STRINGXP_004506361.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-140NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]