PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004506550.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRF

Protein Properties

Length: 330aa MW: 36499.1 Da PI: 7.6584

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004506550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	6.7e-25	82	126	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_004506550.1 82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 126 79****************************************986 PP
2	QLQ	63.8	4.4e-22	20	56	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iq+ XP_004506550.1 20 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQR 56 89*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.8E-12	20	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.9E-16	21	55	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.239	21	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	82	126	IPR014977	WRC domain
Pfam	PF08879	2.9E-21	83	125	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MNSSGGSNGG MMMGFSSNKS PFTVSQWQEL EHQALIFKYM VAGLPVPPDL VLPIQRSFDS 60 ISHNFFHHPT LSYCSFYGKK VDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS 120 RKPVESQTMA QSSSTVTSLT ATGGSSSSRA GDFQILPANN AFGSLQNTAA SGTDRADYHL 180 DTIPYGIPSK EYRYLQGLKS EGGEHSFFAE ASGGNKGLQM ESQLENTWSL MSTRVSSFSA 240 SKSSNNSMLQ NSYPQHSFLS NEYASGEAVK EEGQPLRPFF NEWPKSRDSW SGLEDERSNQ 300 TAFSTTQLSI SIPMSSSDFS ATSSQSPHDN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004506550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004506550.1	0.0	growth-regulating factor 4-like
Swissprot	Q6AWY6	9e-90	GRF3_ORYSJ; Growth-regulating factor 3
TrEMBL	A0A1S2YLE3	0.0	A0A1S2YLE3_CICAR; growth-regulating factor 4-like
STRING	XP_004506549.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4781	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-46	growth-regulating factor 5